Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09515 and BWI76_RS09520 are separated by 19 nucleotides BWI76_RS09520 and BWI76_RS09525 are separated by 227 nucleotides BWI76_RS09525 and BWI76_RS09530 are separated by 117 nucleotides BWI76_RS09530 and BWI76_RS09535 overlap by 4 nucleotides
BWI76_RS09515: BWI76_RS09515 - arginine ABC transporter substrate-binding protein, at 1,991,227 to 1,991,958
_RS09515
BWI76_RS09520: BWI76_RS09520 - arginine ABC transporter ATP-binding protein ArtP, at 1,991,978 to 1,992,706
_RS09520
BWI76_RS09525: BWI76_RS09525 - lipoprotein, at 1,992,934 to 1,993,449
_RS09525
BWI76_RS09530: BWI76_RS09530 - hypothetical protein, at 1,993,567 to 1,993,890
_RS09530
BWI76_RS09535: BWI76_RS09535 - N-acetylmuramoyl-L-alanine amidase amid, at 1,993,887 to 1,994,717
_RS09535
Position (kb) 1992
1993
1994 Strain fitness (log2 ratio) -1
0
1 at 1992.117 kb on + strand, within BWI76_RS09520 at 1992.383 kb on + strand, within BWI76_RS09520 at 1992.421 kb on - strand, within BWI76_RS09520 at 1992.655 kb on - strand at 1992.704 kb on + strand at 1992.704 kb on + strand at 1992.712 kb on - strand at 1992.983 kb on + strand at 1992.983 kb on - strand at 1993.013 kb on + strand, within BWI76_RS09525 at 1993.021 kb on - strand, within BWI76_RS09525 at 1993.026 kb on - strand, within BWI76_RS09525 at 1993.155 kb on + strand, within BWI76_RS09525 at 1993.417 kb on + strand at 1993.420 kb on - strand at 1993.425 kb on - strand at 1993.444 kb on - strand at 1993.498 kb on + strand at 1993.500 kb on + strand at 1993.533 kb on - strand at 1993.590 kb on + strand at 1993.597 kb on + strand at 1993.846 kb on + strand, within BWI76_RS09530 at 1993.990 kb on + strand, within BWI76_RS09535 at 1994.103 kb on - strand, within BWI76_RS09535 at 1994.244 kb on - strand, within BWI76_RS09535
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 1,992,117 + BWI76_RS09520 0.19 +0.5 1,992,383 + BWI76_RS09520 0.56 +0.1 1,992,421 - BWI76_RS09520 0.61 +0.3 1,992,655 - -0.2 1,992,704 + +0.3 1,992,704 + +0.6 1,992,712 - -0.2 1,992,983 + -0.8 1,992,983 - +0.2 1,993,013 + BWI76_RS09525 0.15 -0.4 1,993,021 - BWI76_RS09525 0.17 +0.1 1,993,026 - BWI76_RS09525 0.18 -0.2 1,993,155 + BWI76_RS09525 0.43 +0.2 1,993,417 + -1.4 1,993,420 - +0.6 1,993,425 - +0.4 1,993,444 - +0.5 1,993,498 + -0.1 1,993,500 + -0.2 1,993,533 - +0.3 1,993,590 + +0.1 1,993,597 + +0.1 1,993,846 + BWI76_RS09530 0.86 -0.3 1,993,990 + BWI76_RS09535 0.12 -0.4 1,994,103 - BWI76_RS09535 0.26 -0.1 1,994,244 - BWI76_RS09535 0.43 +0.3
Or see this region's nucleotide sequence