Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01020 and BWI76_RS01025 are separated by 3 nucleotides BWI76_RS01025 and BWI76_RS01030 overlap by 17 nucleotides
BWI76_RS01020: BWI76_RS01020 - DNA helicase Rep, at 207,493 to 209,511
_RS01020
BWI76_RS01025: BWI76_RS01025 - hypothetical protein, at 209,515 to 210,477
_RS01025
BWI76_RS01030: BWI76_RS01030 - cytosine/purine, uracil, thiamine, allantoin permease family protein, at 210,461 to 211,876
_RS01030
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1
2
3 at 209.478 kb on + strand at 209.635 kb on + strand, within BWI76_RS01025 at 209.705 kb on + strand, within BWI76_RS01025 at 209.713 kb on - strand, within BWI76_RS01025 at 209.829 kb on - strand, within BWI76_RS01025 at 209.848 kb on + strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 210.021 kb on + strand, within BWI76_RS01025 at 210.031 kb on + strand, within BWI76_RS01025 at 210.034 kb on - strand, within BWI76_RS01025 at 210.065 kb on + strand, within BWI76_RS01025 at 210.128 kb on - strand, within BWI76_RS01025 at 210.128 kb on - strand, within BWI76_RS01025 at 210.462 kb on - strand at 210.549 kb on + strand at 210.649 kb on + strand, within BWI76_RS01030 at 210.652 kb on - strand, within BWI76_RS01030 at 210.662 kb on - strand, within BWI76_RS01030 at 210.677 kb on + strand, within BWI76_RS01030 at 210.757 kb on + strand, within BWI76_RS01030 at 211.104 kb on + strand, within BWI76_RS01030 at 211.256 kb on - strand, within BWI76_RS01030 at 211.441 kb on + strand, within BWI76_RS01030
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 209,478 + -0.4 209,635 + BWI76_RS01025 0.12 +1.3 209,705 + BWI76_RS01025 0.20 +0.0 209,713 - BWI76_RS01025 0.21 -0.0 209,829 - BWI76_RS01025 0.33 +1.2 209,848 + BWI76_RS01025 0.35 +0.1 209,865 - BWI76_RS01025 0.36 +3.4 209,865 - BWI76_RS01025 0.36 -0.3 209,865 - BWI76_RS01025 0.36 +0.4 210,021 + BWI76_RS01025 0.53 -0.0 210,031 + BWI76_RS01025 0.54 +0.2 210,034 - BWI76_RS01025 0.54 +0.0 210,065 + BWI76_RS01025 0.57 +0.8 210,128 - BWI76_RS01025 0.64 +0.8 210,128 - BWI76_RS01025 0.64 +0.2 210,462 - +1.6 210,549 + +0.3 210,649 + BWI76_RS01030 0.13 +0.2 210,652 - BWI76_RS01030 0.13 -0.2 210,662 - BWI76_RS01030 0.14 +0.3 210,677 + BWI76_RS01030 0.15 +0.3 210,757 + BWI76_RS01030 0.21 +0.1 211,104 + BWI76_RS01030 0.45 +2.1 211,256 - BWI76_RS01030 0.56 +0.0 211,441 + BWI76_RS01030 0.69 +0.1
Or see this region's nucleotide sequence