Experiment: MRS + carbenicillin Time8hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13605 and BBR_RS13610 are separated by 217 nucleotides BBR_RS13610 and BBR_RS13615 overlap by 4 nucleotides BBR_RS13615 and BBR_RS13620 are separated by 127 nucleotides
BBR_RS13605: BBR_RS13605 - GGDEF domain-containing protein, at 824,281 to 826,734
_RS13605
BBR_RS13610: BBR_RS13610 - iron export ABC transporter permease subunit FetB, at 826,952 to 827,740
_RS13610
BBR_RS13615: BBR_RS13615 - ABC transporter ATP-binding protein, at 827,737 to 828,453
_RS13615
BBR_RS13620: BBR_RS13620 - elongation factor P, at 828,581 to 829,144
_RS13620
Position (kb) 826
827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 825.952 kb on - strand, within BBR_RS13605 at 825.952 kb on - strand, within BBR_RS13605 at 825.967 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.040 kb on + strand, within BBR_RS13605 at 826.061 kb on + strand, within BBR_RS13605 at 826.076 kb on + strand, within BBR_RS13605 at 826.132 kb on - strand, within BBR_RS13605 at 826.147 kb on + strand, within BBR_RS13605 at 826.154 kb on - strand, within BBR_RS13605 at 826.154 kb on - strand, within BBR_RS13605 at 826.203 kb on - strand, within BBR_RS13605 at 826.231 kb on + strand, within BBR_RS13605 at 826.274 kb on + strand, within BBR_RS13605 at 826.277 kb on - strand, within BBR_RS13605 at 826.282 kb on - strand, within BBR_RS13605 at 826.295 kb on + strand, within BBR_RS13605 at 826.305 kb on + strand, within BBR_RS13605 at 826.322 kb on + strand, within BBR_RS13605 at 826.385 kb on - strand, within BBR_RS13605 at 826.398 kb on + strand, within BBR_RS13605 at 826.398 kb on + strand, within BBR_RS13605 at 826.507 kb on + strand at 826.544 kb on + strand at 826.561 kb on - strand at 826.574 kb on - strand at 826.593 kb on + strand at 826.607 kb on - strand at 826.610 kb on - strand at 826.624 kb on + strand at 826.639 kb on + strand at 826.652 kb on - strand at 826.689 kb on + strand at 826.712 kb on - strand at 826.719 kb on + strand at 826.734 kb on - strand at 826.832 kb on - strand at 826.939 kb on + strand at 827.007 kb on + strand at 827.013 kb on + strand at 827.013 kb on + strand at 827.021 kb on - strand at 827.039 kb on + strand, within BBR_RS13610 at 827.039 kb on + strand, within BBR_RS13610 at 827.114 kb on - strand, within BBR_RS13610 at 827.121 kb on + strand, within BBR_RS13610 at 827.139 kb on + strand, within BBR_RS13610 at 827.209 kb on - strand, within BBR_RS13610 at 827.213 kb on - strand, within BBR_RS13610 at 827.230 kb on + strand, within BBR_RS13610 at 827.302 kb on + strand, within BBR_RS13610 at 827.310 kb on - strand, within BBR_RS13610 at 827.325 kb on + strand, within BBR_RS13610 at 827.343 kb on - strand, within BBR_RS13610 at 827.346 kb on + strand, within BBR_RS13610 at 827.354 kb on - strand, within BBR_RS13610 at 827.373 kb on + strand, within BBR_RS13610 at 827.373 kb on + strand, within BBR_RS13610 at 827.415 kb on + strand, within BBR_RS13610 at 827.423 kb on - strand, within BBR_RS13610 at 827.430 kb on + strand, within BBR_RS13610 at 827.458 kb on - strand, within BBR_RS13610 at 827.466 kb on + strand, within BBR_RS13610 at 827.473 kb on - strand, within BBR_RS13610 at 827.474 kb on - strand, within BBR_RS13610 at 827.474 kb on - strand, within BBR_RS13610 at 827.545 kb on + strand, within BBR_RS13610 at 827.553 kb on - strand, within BBR_RS13610 at 827.553 kb on - strand, within BBR_RS13610 at 827.592 kb on + strand, within BBR_RS13610 at 827.592 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.635 kb on - strand, within BBR_RS13610 at 827.635 kb on - strand, within BBR_RS13610 at 827.639 kb on + strand, within BBR_RS13610 at 827.717 kb on - strand at 827.733 kb on + strand at 827.756 kb on - strand at 827.765 kb on + strand at 827.862 kb on - strand, within BBR_RS13615 at 827.894 kb on - strand, within BBR_RS13615 at 827.894 kb on - strand, within BBR_RS13615 at 827.963 kb on - strand, within BBR_RS13615 at 827.965 kb on + strand, within BBR_RS13615 at 827.965 kb on + strand, within BBR_RS13615 at 827.973 kb on - strand, within BBR_RS13615 at 828.016 kb on + strand, within BBR_RS13615 at 828.024 kb on - strand, within BBR_RS13615 at 828.024 kb on - strand, within BBR_RS13615 at 828.030 kb on + strand, within BBR_RS13615 at 828.046 kb on + strand, within BBR_RS13615 at 828.046 kb on + strand, within BBR_RS13615 at 828.089 kb on + strand, within BBR_RS13615 at 828.089 kb on + strand, within BBR_RS13615 at 828.097 kb on - strand, within BBR_RS13615 at 828.118 kb on + strand, within BBR_RS13615 at 828.119 kb on + strand, within BBR_RS13615 at 828.137 kb on - strand, within BBR_RS13615 at 828.143 kb on + strand, within BBR_RS13615 at 828.155 kb on - strand, within BBR_RS13615 at 828.197 kb on - strand, within BBR_RS13615 at 828.197 kb on - strand, within BBR_RS13615 at 828.214 kb on + strand, within BBR_RS13615 at 828.234 kb on - strand, within BBR_RS13615 at 828.253 kb on - strand, within BBR_RS13615 at 828.283 kb on + strand, within BBR_RS13615 at 828.311 kb on + strand, within BBR_RS13615 at 828.319 kb on + strand, within BBR_RS13615 at 828.337 kb on + strand, within BBR_RS13615 at 828.347 kb on + strand, within BBR_RS13615 at 828.347 kb on + strand, within BBR_RS13615 at 828.358 kb on - strand, within BBR_RS13615 at 828.364 kb on + strand, within BBR_RS13615 at 828.372 kb on - strand, within BBR_RS13615 at 828.429 kb on - strand at 828.429 kb on - strand at 828.469 kb on - strand at 828.469 kb on - strand at 828.469 kb on - strand at 828.506 kb on - strand at 828.506 kb on - strand at 828.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MRS + carbenicillin Time8hr remove 825,952 - BBR_RS13605 0.68 +0.8 825,952 - BBR_RS13605 0.68 -0.7 825,967 + BBR_RS13605 0.69 +1.5 826,038 + BBR_RS13605 0.72 +0.7 826,038 + BBR_RS13605 0.72 +2.0 826,038 + BBR_RS13605 0.72 -1.1 826,038 + BBR_RS13605 0.72 +1.4 826,040 + BBR_RS13605 0.72 -1.5 826,061 + BBR_RS13605 0.73 -1.6 826,076 + BBR_RS13605 0.73 -0.7 826,132 - BBR_RS13605 0.75 -3.2 826,147 + BBR_RS13605 0.76 -0.5 826,154 - BBR_RS13605 0.76 -1.5 826,154 - BBR_RS13605 0.76 -0.5 826,203 - BBR_RS13605 0.78 +0.5 826,231 + BBR_RS13605 0.79 -0.6 826,274 + BBR_RS13605 0.81 -0.4 826,277 - BBR_RS13605 0.81 -0.5 826,282 - BBR_RS13605 0.82 -1.5 826,295 + BBR_RS13605 0.82 +1.3 826,305 + BBR_RS13605 0.82 -0.8 826,322 + BBR_RS13605 0.83 +0.5 826,385 - BBR_RS13605 0.86 +1.3 826,398 + BBR_RS13605 0.86 -1.3 826,398 + BBR_RS13605 0.86 -0.4 826,507 + -0.6 826,544 + -1.5 826,561 - +0.0 826,574 - +0.7 826,593 + -1.5 826,607 - -0.5 826,610 - -2.5 826,624 + +0.3 826,639 + +3.2 826,652 - +1.1 826,689 + -0.2 826,712 - +0.5 826,719 + -2.2 826,734 - -1.2 826,832 - +1.8 826,939 + +0.6 827,007 + -1.3 827,013 + +0.3 827,013 + +1.8 827,021 - +1.8 827,039 + BBR_RS13610 0.11 -3.8 827,039 + BBR_RS13610 0.11 +2.2 827,114 - BBR_RS13610 0.21 -0.2 827,121 + BBR_RS13610 0.21 +1.5 827,139 + BBR_RS13610 0.24 +2.8 827,209 - BBR_RS13610 0.33 +0.7 827,213 - BBR_RS13610 0.33 -0.5 827,230 + BBR_RS13610 0.35 +0.5 827,302 + BBR_RS13610 0.44 -1.5 827,310 - BBR_RS13610 0.45 +0.5 827,325 + BBR_RS13610 0.47 +2.7 827,343 - BBR_RS13610 0.50 -0.9 827,346 + BBR_RS13610 0.50 -0.2 827,354 - BBR_RS13610 0.51 +0.4 827,373 + BBR_RS13610 0.53 +2.0 827,373 + BBR_RS13610 0.53 -0.5 827,415 + BBR_RS13610 0.59 -0.6 827,423 - BBR_RS13610 0.60 -1.5 827,430 + BBR_RS13610 0.61 +1.8 827,458 - BBR_RS13610 0.64 +1.7 827,466 + BBR_RS13610 0.65 +2.1 827,473 - BBR_RS13610 0.66 -0.6 827,474 - BBR_RS13610 0.66 +1.3 827,474 - BBR_RS13610 0.66 -0.5 827,545 + BBR_RS13610 0.75 +1.2 827,553 - BBR_RS13610 0.76 -1.1 827,553 - BBR_RS13610 0.76 -0.9 827,592 + BBR_RS13610 0.81 +0.1 827,592 + BBR_RS13610 0.81 +0.3 827,627 + BBR_RS13610 0.86 -0.2 827,627 + BBR_RS13610 0.86 +1.2 827,627 + BBR_RS13610 0.86 +1.9 827,627 + BBR_RS13610 0.86 +0.2 827,635 - BBR_RS13610 0.87 -0.5 827,635 - BBR_RS13610 0.87 -0.5 827,639 + BBR_RS13610 0.87 -1.5 827,717 - -0.3 827,733 + -0.8 827,756 - -0.4 827,765 + +1.7 827,862 - BBR_RS13615 0.17 +1.1 827,894 - BBR_RS13615 0.22 -0.1 827,894 - BBR_RS13615 0.22 +0.3 827,963 - BBR_RS13615 0.32 -0.8 827,965 + BBR_RS13615 0.32 +1.3 827,965 + BBR_RS13615 0.32 -0.9 827,973 - BBR_RS13615 0.33 -1.0 828,016 + BBR_RS13615 0.39 -0.3 828,024 - BBR_RS13615 0.40 +0.1 828,024 - BBR_RS13615 0.40 +0.4 828,030 + BBR_RS13615 0.41 +1.2 828,046 + BBR_RS13615 0.43 +3.7 828,046 + BBR_RS13615 0.43 -0.7 828,089 + BBR_RS13615 0.49 -1.0 828,089 + BBR_RS13615 0.49 -0.9 828,097 - BBR_RS13615 0.50 -0.6 828,118 + BBR_RS13615 0.53 +0.4 828,119 + BBR_RS13615 0.53 -0.0 828,137 - BBR_RS13615 0.56 +0.8 828,143 + BBR_RS13615 0.57 +0.0 828,155 - BBR_RS13615 0.58 +0.5 828,197 - BBR_RS13615 0.64 +0.5 828,197 - BBR_RS13615 0.64 -0.7 828,214 + BBR_RS13615 0.67 -0.5 828,234 - BBR_RS13615 0.69 -0.1 828,253 - BBR_RS13615 0.72 +1.5 828,283 + BBR_RS13615 0.76 +1.9 828,311 + BBR_RS13615 0.80 +0.9 828,319 + BBR_RS13615 0.81 -0.2 828,337 + BBR_RS13615 0.84 -0.8 828,347 + BBR_RS13615 0.85 -2.0 828,347 + BBR_RS13615 0.85 +0.3 828,358 - BBR_RS13615 0.87 -1.6 828,364 + BBR_RS13615 0.87 +3.0 828,372 - BBR_RS13615 0.89 +0.4 828,429 - +0.5 828,429 - -1.9 828,469 - -0.3 828,469 - +1.6 828,469 - -3.1 828,506 - -1.5 828,506 - -0.6 828,539 + -0.5
Or see this region's nucleotide sequence