Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20425

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20420 and AO356_20425 are separated by 308 nucleotidesAO356_20425 and AO356_20430 are separated by 78 nucleotides AO356_20420: AO356_20420 - enoyl-CoA hydratase, at 4,560,743 to 4,561,432 _20420 AO356_20425: AO356_20425 - tRNA-Ser, at 4,561,741 to 4,561,830 _20425 AO356_20430: AO356_20430 - hypothetical protein, at 4,561,909 to 4,562,268 _20430 Position (kb) 4561 4562Strain fitness (log2 ratio) -2 -1 0 1 2at 4560.751 kb on + strandat 4560.752 kb on - strandat 4560.752 kb on - strandat 4560.752 kb on - strandat 4561.413 kb on + strandat 4561.448 kb on - strandat 4561.448 kb on - strandat 4561.448 kb on - strandat 4561.448 kb on - strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.568 kb on + strandat 4561.570 kb on + strandat 4561.584 kb on + strandat 4561.908 kb on + strandat 4561.957 kb on + strand, within AO356_20430at 4561.957 kb on + strand, within AO356_20430at 4561.958 kb on - strand, within AO356_20430at 4561.958 kb on - strand, within AO356_20430at 4561.958 kb on - strand, within AO356_20430at 4561.960 kb on + strand, within AO356_20430at 4561.960 kb on + strand, within AO356_20430at 4561.960 kb on + strand, within AO356_20430at 4561.979 kb on + strand, within AO356_20430at 4561.979 kb on + strand, within AO356_20430at 4561.980 kb on - strand, within AO356_20430at 4562.008 kb on - strand, within AO356_20430at 4562.079 kb on + strand, within AO356_20430at 4562.106 kb on + strand, within AO356_20430at 4562.131 kb on + strand, within AO356_20430at 4562.132 kb on - strand, within AO356_20430at 4562.132 kb on - strand, within AO356_20430at 4562.144 kb on + strand, within AO356_20430at 4562.144 kb on + strand, within AO356_20430at 4562.144 kb on + strand, within AO356_20430at 4562.144 kb on + strand, within AO356_20430at 4562.145 kb on - strand, within AO356_20430at 4562.217 kb on + strand, within AO356_20430at 4562.218 kb on - strand, within AO356_20430at 4562.218 kb on - strand, within AO356_20430at 4562.281 kb on + strandat 4562.281 kb on + strandat 4562.294 kb on - strandat 4562.320 kb on + strandat 4562.341 kb on - strandat 4562.514 kb on + strandat 4562.514 kb on + strandat 4562.514 kb on + strandat 4562.547 kb on + strandat 4562.737 kb on + strandat 4562.737 kb on + strandat 4562.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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4,560,751 + +0.3
4,560,752 - +0.3
4,560,752 - +0.6
4,560,752 - +0.7
4,561,413 + +2.3
4,561,448 - -1.1
4,561,448 - +0.3
4,561,448 - -0.3
4,561,448 - +0.3
4,561,568 + +0.6
4,561,568 + -0.8
4,561,568 + +0.8
4,561,568 + +0.6
4,561,568 + -0.6
4,561,568 + +1.0
4,561,568 + +1.4
4,561,568 + -0.2
4,561,568 + -0.3
4,561,570 + +0.7
4,561,584 + -1.7
4,561,908 + -1.0
4,561,957 + AO356_20430 0.13 +1.1
4,561,957 + AO356_20430 0.13 +0.5
4,561,958 - AO356_20430 0.14 +0.8
4,561,958 - AO356_20430 0.14 +0.1
4,561,958 - AO356_20430 0.14 +0.1
4,561,960 + AO356_20430 0.14 -0.1
4,561,960 + AO356_20430 0.14 -1.9
4,561,960 + AO356_20430 0.14 +0.6
4,561,979 + AO356_20430 0.19 -0.1
4,561,979 + AO356_20430 0.19 +0.2
4,561,980 - AO356_20430 0.20 -0.7
4,562,008 - AO356_20430 0.28 -0.5
4,562,079 + AO356_20430 0.47 -0.3
4,562,106 + AO356_20430 0.55 +0.7
4,562,131 + AO356_20430 0.62 -0.7
4,562,132 - AO356_20430 0.62 +0.1
4,562,132 - AO356_20430 0.62 +0.9
4,562,144 + AO356_20430 0.65 +0.1
4,562,144 + AO356_20430 0.65 +0.5
4,562,144 + AO356_20430 0.65 -0.7
4,562,144 + AO356_20430 0.65 -0.5
4,562,145 - AO356_20430 0.66 +0.9
4,562,217 + AO356_20430 0.86 +0.2
4,562,218 - AO356_20430 0.86 +0.4
4,562,218 - AO356_20430 0.86 +0.7
4,562,281 + -0.7
4,562,281 + -1.1
4,562,294 - +0.5
4,562,320 + -1.1
4,562,341 - +1.4
4,562,514 + -0.1
4,562,514 + -0.1
4,562,514 + -1.4
4,562,547 + +0.7
4,562,737 + -1.1
4,562,737 + +0.1
4,562,760 - -0.9

Or see this region's nucleotide sequence