Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18080

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_18065 and AO356_18070 are separated by 1 nucleotidesAO356_18070 and AO356_18075 are separated by 63 nucleotidesAO356_18075 and AO356_18080 are separated by 118 nucleotidesAO356_18080 and AO356_18085 are separated by 172 nucleotidesAO356_18085 and AO356_18090 overlap by 4 nucleotides AO356_18065: AO356_18065 - 7-carboxy-7-deazaguanine synthase, at 4,072,507 to 4,073,154 _18065 AO356_18070: AO356_18070 - 7-cyano-7-deazaguanine synthase, at 4,073,156 to 4,073,848 _18070 AO356_18075: AO356_18075 - tRNA-Lys, at 4,073,912 to 4,073,987 _18075 AO356_18080: AO356_18080 - LysR family transcriptional regulator, at 4,074,106 to 4,075,041 _18080 AO356_18085: AO356_18085 - thermostable hemolysin, at 4,075,214 to 4,075,831 _18085 AO356_18090: AO356_18090 - AMP-dependent synthetase, at 4,075,828 to 4,077,393 _18090 Position (kb) 4074 4075 4076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4073.121 kb on + strandat 4073.121 kb on + strandat 4073.122 kb on - strandat 4073.125 kb on + strandat 4073.125 kb on + strandat 4073.126 kb on - strandat 4073.126 kb on - strandat 4073.126 kb on - strandat 4073.282 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.470 kb on + strand, within AO356_18070at 4073.470 kb on + strand, within AO356_18070at 4073.471 kb on - strand, within AO356_18070at 4073.471 kb on - strand, within AO356_18070at 4073.872 kb on + strandat 4073.889 kb on + strandat 4074.108 kb on - strandat 4074.108 kb on - strandat 4074.332 kb on - strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.335 kb on + strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.336 kb on - strand, within AO356_18080at 4074.366 kb on + strand, within AO356_18080at 4074.368 kb on + strand, within AO356_18080at 4074.368 kb on + strand, within AO356_18080at 4074.368 kb on + strand, within AO356_18080at 4074.368 kb on + strand, within AO356_18080at 4074.369 kb on - strand, within AO356_18080at 4074.369 kb on - strand, within AO356_18080at 4074.369 kb on - strand, within AO356_18080at 4074.369 kb on - strand, within AO356_18080at 4074.526 kb on + strand, within AO356_18080at 4074.526 kb on + strand, within AO356_18080at 4074.526 kb on + strand, within AO356_18080at 4074.526 kb on + strand, within AO356_18080at 4074.527 kb on - strand, within AO356_18080at 4074.622 kb on - strand, within AO356_18080at 4074.622 kb on - strand, within AO356_18080at 4074.642 kb on + strand, within AO356_18080at 4074.645 kb on + strand, within AO356_18080at 4074.646 kb on - strand, within AO356_18080at 4074.740 kb on - strand, within AO356_18080at 4074.790 kb on + strand, within AO356_18080at 4074.791 kb on - strand, within AO356_18080at 4074.791 kb on - strand, within AO356_18080at 4074.794 kb on - strand, within AO356_18080at 4074.794 kb on - strand, within AO356_18080at 4074.805 kb on - strand, within AO356_18080at 4074.807 kb on + strand, within AO356_18080at 4074.807 kb on + strand, within AO356_18080at 4074.807 kb on + strand, within AO356_18080at 4074.807 kb on + strand, within AO356_18080at 4074.811 kb on + strand, within AO356_18080at 4074.812 kb on - strand, within AO356_18080at 4074.812 kb on - strand, within AO356_18080at 4074.812 kb on - strand, within AO356_18080at 4074.821 kb on + strand, within AO356_18080at 4074.895 kb on - strand, within AO356_18080at 4074.895 kb on - strand, within AO356_18080at 4074.914 kb on + strand, within AO356_18080at 4074.914 kb on + strand, within AO356_18080at 4074.914 kb on + strand, within AO356_18080at 4074.914 kb on + strand, within AO356_18080at 4074.914 kb on + strand, within AO356_18080at 4074.915 kb on - strand, within AO356_18080at 4074.915 kb on - strand, within AO356_18080at 4074.915 kb on - strand, within AO356_18080at 4074.915 kb on - strand, within AO356_18080at 4074.915 kb on - strand, within AO356_18080at 4074.919 kb on + strand, within AO356_18080at 4074.920 kb on - strand, within AO356_18080at 4074.920 kb on - strand, within AO356_18080at 4074.977 kb on + strandat 4074.977 kb on + strandat 4074.977 kb on + strandat 4074.977 kb on + strandat 4074.978 kb on - strandat 4074.978 kb on - strandat 4075.020 kb on + strandat 4075.021 kb on - strandat 4075.026 kb on + strandat 4075.027 kb on - strandat 4075.027 kb on - strandat 4075.027 kb on - strandat 4075.027 kb on - strandat 4075.029 kb on + strandat 4075.030 kb on - strandat 4075.030 kb on - strandat 4075.030 kb on - strandat 4075.030 kb on - strandat 4075.041 kb on + strandat 4075.042 kb on - strandat 4075.042 kb on - strandat 4075.071 kb on + strandat 4075.088 kb on - strandat 4075.088 kb on - strandat 4075.192 kb on + strandat 4075.193 kb on - strandat 4075.193 kb on - strandat 4075.221 kb on + strandat 4075.221 kb on + strandat 4075.222 kb on - strandat 4075.222 kb on - strandat 4075.237 kb on + strandat 4075.237 kb on + strandat 4075.272 kb on + strandat 4075.272 kb on + strandat 4075.272 kb on + strandat 4075.273 kb on - strandat 4075.295 kb on + strand, within AO356_18085at 4075.378 kb on + strand, within AO356_18085at 4075.415 kb on + strand, within AO356_18085at 4075.415 kb on + strand, within AO356_18085at 4075.415 kb on + strand, within AO356_18085at 4075.415 kb on + strand, within AO356_18085at 4075.577 kb on + strand, within AO356_18085at 4075.578 kb on - strand, within AO356_18085at 4075.703 kb on + strand, within AO356_18085at 4075.703 kb on + strand, within AO356_18085at 4075.703 kb on + strand, within AO356_18085at 4075.703 kb on + strand, within AO356_18085at 4075.703 kb on + strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.704 kb on - strand, within AO356_18085at 4075.780 kb on + strandat 4075.780 kb on + strandat 4075.780 kb on + strandat 4075.780 kb on + strandat 4075.780 kb on + strandat 4075.780 kb on + strandat 4075.781 kb on - strandat 4075.781 kb on - strandat 4075.842 kb on + strandat 4075.843 kb on - strandat 4075.853 kb on + strandat 4075.853 kb on + strandat 4075.853 kb on + strandat 4075.853 kb on + strandat 4075.854 kb on - strandat 4075.936 kb on + strandat 4075.936 kb on + strandat 4075.937 kb on - strandat 4076.006 kb on - strand, within AO356_18090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
remove
4,073,121 + -0.7
4,073,121 + -1.3
4,073,122 - +1.1
4,073,125 + -1.5
4,073,125 + -0.9
4,073,126 - -2.3
4,073,126 - -1.4
4,073,126 - +0.6
4,073,282 + AO356_18070 0.18 -0.9
4,073,453 + AO356_18070 0.43 -0.9
4,073,453 + AO356_18070 0.43 -1.9
4,073,453 + AO356_18070 0.43 -0.2
4,073,453 + AO356_18070 0.43 -1.3
4,073,453 + AO356_18070 0.43 -0.7
4,073,453 + AO356_18070 0.43 +1.1
4,073,453 + AO356_18070 0.43 -0.4
4,073,454 - AO356_18070 0.43 -2.5
4,073,454 - AO356_18070 0.43 +1.1
4,073,454 - AO356_18070 0.43 +0.1
4,073,454 - AO356_18070 0.43 -0.4
4,073,454 - AO356_18070 0.43 +0.5
4,073,454 - AO356_18070 0.43 +0.3
4,073,470 + AO356_18070 0.45 -3.3
4,073,470 + AO356_18070 0.45 -0.5
4,073,471 - AO356_18070 0.45 -0.3
4,073,471 - AO356_18070 0.45 -0.5
4,073,872 + -0.9
4,073,889 + +0.3
4,074,108 - -0.5
4,074,108 - +0.1
4,074,332 - AO356_18080 0.24 -0.7
4,074,335 + AO356_18080 0.24 +0.8
4,074,335 + AO356_18080 0.24 +0.3
4,074,335 + AO356_18080 0.24 +0.5
4,074,335 + AO356_18080 0.24 -0.2
4,074,335 + AO356_18080 0.24 -1.2
4,074,335 + AO356_18080 0.24 +2.1
4,074,335 + AO356_18080 0.24 -0.1
4,074,336 - AO356_18080 0.25 -1.3
4,074,336 - AO356_18080 0.25 +0.6
4,074,336 - AO356_18080 0.25 +0.7
4,074,336 - AO356_18080 0.25 +1.9
4,074,336 - AO356_18080 0.25 -1.1
4,074,336 - AO356_18080 0.25 -0.5
4,074,336 - AO356_18080 0.25 +0.1
4,074,336 - AO356_18080 0.25 +0.7
4,074,336 - AO356_18080 0.25 -2.3
4,074,336 - AO356_18080 0.25 +1.1
4,074,366 + AO356_18080 0.28 +1.9
4,074,368 + AO356_18080 0.28 +0.8
4,074,368 + AO356_18080 0.28 +0.6
4,074,368 + AO356_18080 0.28 +0.3
4,074,368 + AO356_18080 0.28 +0.1
4,074,369 - AO356_18080 0.28 -0.1
4,074,369 - AO356_18080 0.28 +0.6
4,074,369 - AO356_18080 0.28 +1.0
4,074,369 - AO356_18080 0.28 +0.4
4,074,526 + AO356_18080 0.45 +0.4
4,074,526 + AO356_18080 0.45 -2.3
4,074,526 + AO356_18080 0.45 +0.1
4,074,526 + AO356_18080 0.45 -0.2
4,074,527 - AO356_18080 0.45 -0.2
4,074,622 - AO356_18080 0.55 +1.1
4,074,622 - AO356_18080 0.55 +0.6
4,074,642 + AO356_18080 0.57 -0.2
4,074,645 + AO356_18080 0.58 +0.2
4,074,646 - AO356_18080 0.58 +0.5
4,074,740 - AO356_18080 0.68 +0.1
4,074,790 + AO356_18080 0.73 +0.1
4,074,791 - AO356_18080 0.73 -0.3
4,074,791 - AO356_18080 0.73 +0.7
4,074,794 - AO356_18080 0.74 +0.1
4,074,794 - AO356_18080 0.74 -0.9
4,074,805 - AO356_18080 0.75 +0.5
4,074,807 + AO356_18080 0.75 -0.9
4,074,807 + AO356_18080 0.75 +0.6
4,074,807 + AO356_18080 0.75 +2.1
4,074,807 + AO356_18080 0.75 +0.6
4,074,811 + AO356_18080 0.75 +0.6
4,074,812 - AO356_18080 0.75 -0.1
4,074,812 - AO356_18080 0.75 +0.1
4,074,812 - AO356_18080 0.75 +2.1
4,074,821 + AO356_18080 0.76 +0.3
4,074,895 - AO356_18080 0.84 +0.6
4,074,895 - AO356_18080 0.84 -0.7
4,074,914 + AO356_18080 0.86 -0.5
4,074,914 + AO356_18080 0.86 +0.8
4,074,914 + AO356_18080 0.86 +0.4
4,074,914 + AO356_18080 0.86 -0.4
4,074,914 + AO356_18080 0.86 +0.1
4,074,915 - AO356_18080 0.86 +0.2
4,074,915 - AO356_18080 0.86 -0.5
4,074,915 - AO356_18080 0.86 -0.4
4,074,915 - AO356_18080 0.86 +0.4
4,074,915 - AO356_18080 0.86 -0.4
4,074,919 + AO356_18080 0.87 +0.6
4,074,920 - AO356_18080 0.87 +0.1
4,074,920 - AO356_18080 0.87 +1.7
4,074,977 + +0.6
4,074,977 + +0.5
4,074,977 + -0.7
4,074,977 + -0.1
4,074,978 - +0.1
4,074,978 - +0.4
4,075,020 + +0.6
4,075,021 - -0.9
4,075,026 + +0.1
4,075,027 - -0.4
4,075,027 - +0.1
4,075,027 - -0.4
4,075,027 - -0.6
4,075,029 + +0.4
4,075,030 - +1.1
4,075,030 - -0.7
4,075,030 - +0.3
4,075,030 - +0.2
4,075,041 + -0.9
4,075,042 - +0.6
4,075,042 - +0.3
4,075,071 + +1.3
4,075,088 - -0.5
4,075,088 - +0.7
4,075,192 + +1.1
4,075,193 - +1.1
4,075,193 - +0.1
4,075,221 + -0.9
4,075,221 + -0.1
4,075,222 - -0.7
4,075,222 - +0.1
4,075,237 + +0.8
4,075,237 + +1.6
4,075,272 + +0.7
4,075,272 + +0.5
4,075,272 + +0.9
4,075,273 - -0.3
4,075,295 + AO356_18085 0.13 +0.1
4,075,378 + AO356_18085 0.27 -0.3
4,075,415 + AO356_18085 0.33 +1.1
4,075,415 + AO356_18085 0.33 +0.5
4,075,415 + AO356_18085 0.33 +0.2
4,075,415 + AO356_18085 0.33 +0.1
4,075,577 + AO356_18085 0.59 +0.1
4,075,578 - AO356_18085 0.59 +0.6
4,075,703 + AO356_18085 0.79 -0.2
4,075,703 + AO356_18085 0.79 +0.5
4,075,703 + AO356_18085 0.79 +1.4
4,075,703 + AO356_18085 0.79 -0.6
4,075,703 + AO356_18085 0.79 -1.3
4,075,704 - AO356_18085 0.79 +0.1
4,075,704 - AO356_18085 0.79 +0.2
4,075,704 - AO356_18085 0.79 +1.1
4,075,704 - AO356_18085 0.79 +0.2
4,075,704 - AO356_18085 0.79 +0.4
4,075,704 - AO356_18085 0.79 +0.2
4,075,704 - AO356_18085 0.79 +0.3
4,075,704 - AO356_18085 0.79 +0.2
4,075,780 + +0.5
4,075,780 + +1.1
4,075,780 + +1.1
4,075,780 + +0.6
4,075,780 + -0.0
4,075,780 + +0.1
4,075,781 - +2.0
4,075,781 - +1.1
4,075,842 + +1.2
4,075,843 - -0.4
4,075,853 + -0.9
4,075,853 + -0.8
4,075,853 + -0.1
4,075,853 + -0.1
4,075,854 - -2.1
4,075,936 + +1.1
4,075,936 + +0.5
4,075,937 - +0.8
4,076,006 - AO356_18090 0.11 -0.8

Or see this region's nucleotide sequence