Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10250

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10245 and AO356_10250 are separated by 507 nucleotidesAO356_10250 and AO356_10255 are separated by 334 nucleotides AO356_10245: AO356_10245 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 2,311,926 to 2,312,687 _10245 AO356_10250: AO356_10250 - hypothetical protein, at 2,313,195 to 2,313,965 _10250 AO356_10255: AO356_10255 - SfnB family sulfur acquisition oxidoreductase, at 2,314,300 to 2,315,541 _10255 Position (kb) 2313 2314Strain fitness (log2 ratio) -2 -1 0 1 2at 2312.698 kb on - strandat 2312.735 kb on + strandat 2312.736 kb on - strandat 2312.736 kb on - strandat 2312.810 kb on + strandat 2312.813 kb on - strandat 2312.824 kb on + strandat 2312.828 kb on + strandat 2312.828 kb on + strandat 2312.828 kb on + strandat 2312.829 kb on - strandat 2312.831 kb on - strandat 2312.870 kb on + strandat 2312.871 kb on - strandat 2312.871 kb on - strandat 2312.949 kb on + strandat 2312.949 kb on + strandat 2312.949 kb on + strandat 2312.950 kb on - strandat 2312.950 kb on - strandat 2312.950 kb on - strandat 2312.950 kb on - strandat 2312.962 kb on + strandat 2312.963 kb on - strandat 2312.963 kb on - strandat 2312.963 kb on - strandat 2312.963 kb on - strandat 2312.963 kb on - strandat 2312.993 kb on + strandat 2312.993 kb on + strandat 2313.037 kb on - strandat 2313.037 kb on - strandat 2313.037 kb on - strandat 2313.041 kb on - strandat 2313.065 kb on - strandat 2313.086 kb on - strandat 2313.109 kb on - strandat 2313.121 kb on + strandat 2313.122 kb on - strandat 2313.168 kb on + strandat 2313.169 kb on - strandat 2313.203 kb on + strandat 2313.203 kb on + strandat 2313.203 kb on + strandat 2313.203 kb on + strandat 2313.203 kb on + strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.204 kb on - strandat 2313.254 kb on + strandat 2313.254 kb on + strandat 2313.255 kb on - strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.266 kb on + strandat 2313.297 kb on - strand, within AO356_10250at 2313.297 kb on - strand, within AO356_10250at 2313.297 kb on - strand, within AO356_10250at 2313.357 kb on + strand, within AO356_10250at 2313.357 kb on + strand, within AO356_10250at 2313.357 kb on + strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.663 kb on + strand, within AO356_10250at 2313.663 kb on + strand, within AO356_10250at 2313.664 kb on - strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.765 kb on - strand, within AO356_10250at 2313.765 kb on - strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.966 kb on + strandat 2313.966 kb on + strandat 2313.966 kb on + strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.107 kb on + strandat 2314.109 kb on + strandat 2314.155 kb on + strandat 2314.179 kb on + strandat 2314.179 kb on + strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.232 kb on - strandat 2314.263 kb on - strandat 2314.263 kb on - strandat 2314.298 kb on + strandat 2314.298 kb on + strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.528 kb on + strand, within AO356_10255at 2314.568 kb on + strand, within AO356_10255at 2314.569 kb on - strand, within AO356_10255at 2314.811 kb on - strand, within AO356_10255

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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2,312,698 - +0.9
2,312,735 + +0.0
2,312,736 - -0.9
2,312,736 - +0.3
2,312,810 + +0.3
2,312,813 - -0.3
2,312,824 + +2.2
2,312,828 + -0.7
2,312,828 + +0.0
2,312,828 + -0.5
2,312,829 - -0.7
2,312,831 - -0.8
2,312,870 + -1.7
2,312,871 - +0.3
2,312,871 - -2.4
2,312,949 + -2.5
2,312,949 + +0.3
2,312,949 + -0.7
2,312,950 - +0.3
2,312,950 - +0.2
2,312,950 - -1.2
2,312,950 - -0.2
2,312,962 + +0.3
2,312,963 - -0.2
2,312,963 - +1.3
2,312,963 - -1.0
2,312,963 - +0.1
2,312,963 - -0.1
2,312,993 + +1.3
2,312,993 + +0.3
2,313,037 - +0.2
2,313,037 - -0.2
2,313,037 - -0.7
2,313,041 - +0.3
2,313,065 - +0.3
2,313,086 - +0.3
2,313,109 - -1.5
2,313,121 + -0.2
2,313,122 - -1.1
2,313,168 + +1.3
2,313,169 - +0.3
2,313,203 + +0.1
2,313,203 + +0.8
2,313,203 + -0.7
2,313,203 + -0.0
2,313,203 + +0.0
2,313,204 - +0.3
2,313,204 - +0.8
2,313,204 - +0.2
2,313,204 - +0.7
2,313,204 - +0.1
2,313,204 - +1.3
2,313,204 - +1.0
2,313,204 - -0.0
2,313,204 - -0.7
2,313,254 + -0.0
2,313,254 + +0.2
2,313,255 - -0.0
2,313,266 + -0.2
2,313,266 + -0.2
2,313,266 + -0.1
2,313,266 + -2.2
2,313,266 + +0.9
2,313,266 + -1.7
2,313,266 + -0.2
2,313,297 - AO356_10250 0.13 +1.0
2,313,297 - AO356_10250 0.13 -1.7
2,313,297 - AO356_10250 0.13 -0.7
2,313,357 + AO356_10250 0.21 +0.1
2,313,357 + AO356_10250 0.21 -0.7
2,313,357 + AO356_10250 0.21 -1.0
2,313,358 - AO356_10250 0.21 -1.2
2,313,358 - AO356_10250 0.21 -0.0
2,313,358 - AO356_10250 0.21 +0.8
2,313,663 + AO356_10250 0.61 -0.0
2,313,663 + AO356_10250 0.61 -1.2
2,313,664 - AO356_10250 0.61 -0.5
2,313,764 + AO356_10250 0.74 +0.3
2,313,764 + AO356_10250 0.74 -0.8
2,313,764 + AO356_10250 0.74 -0.3
2,313,764 + AO356_10250 0.74 -0.2
2,313,764 + AO356_10250 0.74 -0.5
2,313,765 - AO356_10250 0.74 +0.3
2,313,765 - AO356_10250 0.74 -1.5
2,313,825 + AO356_10250 0.82 -1.4
2,313,825 + AO356_10250 0.82 -0.7
2,313,825 + AO356_10250 0.82 +1.0
2,313,825 + AO356_10250 0.82 -0.1
2,313,825 + AO356_10250 0.82 -0.2
2,313,825 + AO356_10250 0.82 +0.3
2,313,825 + AO356_10250 0.82 -0.4
2,313,826 - AO356_10250 0.82 -0.3
2,313,826 - AO356_10250 0.82 -0.1
2,313,826 - AO356_10250 0.82 +0.4
2,313,826 - AO356_10250 0.82 -0.3
2,313,826 - AO356_10250 0.82 +0.2
2,313,826 - AO356_10250 0.82 +0.0
2,313,966 + +0.3
2,313,966 + -0.3
2,313,966 + +0.2
2,313,967 - -0.1
2,313,967 - +0.7
2,313,967 - +0.1
2,313,967 - -1.4
2,313,967 - +0.5
2,314,098 + -1.1
2,314,098 + -0.0
2,314,098 + +0.6
2,314,098 + +0.6
2,314,099 - -0.1
2,314,099 - +0.2
2,314,099 - +0.3
2,314,099 - +1.5
2,314,107 + -0.0
2,314,109 + -1.5
2,314,155 + +0.0
2,314,179 + +0.6
2,314,179 + +0.6
2,314,180 - -0.5
2,314,180 - -0.5
2,314,180 - -0.1
2,314,180 - +0.6
2,314,232 - -0.1
2,314,263 - -0.2
2,314,263 - +0.0
2,314,298 + -0.1
2,314,298 + +0.3
2,314,299 - +1.0
2,314,299 - +0.3
2,314,299 - -0.5
2,314,299 - +1.0
2,314,528 + AO356_10255 0.18 +0.6
2,314,568 + AO356_10255 0.22 -0.9
2,314,569 - AO356_10255 0.22 +0.2
2,314,811 - AO356_10255 0.41 +0.5

Or see this region's nucleotide sequence