Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10245 and AO356_10250 are separated by 507 nucleotides AO356_10250 and AO356_10255 are separated by 334 nucleotides
AO356_10245: AO356_10245 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 2,311,926 to 2,312,687
_10245
AO356_10250: AO356_10250 - hypothetical protein, at 2,313,195 to 2,313,965
_10250
AO356_10255: AO356_10255 - SfnB family sulfur acquisition oxidoreductase, at 2,314,300 to 2,315,541
_10255
Position (kb)
2313
2314 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2312.698 kb on - strand at 2312.735 kb on + strand at 2312.736 kb on - strand at 2312.736 kb on - strand at 2312.810 kb on + strand at 2312.813 kb on - strand at 2312.824 kb on + strand at 2312.828 kb on + strand at 2312.828 kb on + strand at 2312.828 kb on + strand at 2312.829 kb on - strand at 2312.831 kb on - strand at 2312.870 kb on + strand at 2312.871 kb on - strand at 2312.871 kb on - strand at 2312.949 kb on + strand at 2312.949 kb on + strand at 2312.949 kb on + strand at 2312.950 kb on - strand at 2312.950 kb on - strand at 2312.950 kb on - strand at 2312.950 kb on - strand at 2312.962 kb on + strand at 2312.963 kb on - strand at 2312.963 kb on - strand at 2312.963 kb on - strand at 2312.963 kb on - strand at 2312.963 kb on - strand at 2312.993 kb on + strand at 2312.993 kb on + strand at 2313.037 kb on - strand at 2313.037 kb on - strand at 2313.037 kb on - strand at 2313.041 kb on - strand at 2313.065 kb on - strand at 2313.086 kb on - strand at 2313.109 kb on - strand at 2313.121 kb on + strand at 2313.122 kb on - strand at 2313.168 kb on + strand at 2313.169 kb on - strand at 2313.203 kb on + strand at 2313.203 kb on + strand at 2313.203 kb on + strand at 2313.203 kb on + strand at 2313.203 kb on + strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.204 kb on - strand at 2313.254 kb on + strand at 2313.254 kb on + strand at 2313.255 kb on - strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.266 kb on + strand at 2313.297 kb on - strand, within AO356_10250 at 2313.297 kb on - strand, within AO356_10250 at 2313.297 kb on - strand, within AO356_10250 at 2313.357 kb on + strand, within AO356_10250 at 2313.357 kb on + strand, within AO356_10250 at 2313.357 kb on + strand, within AO356_10250 at 2313.358 kb on - strand, within AO356_10250 at 2313.358 kb on - strand, within AO356_10250 at 2313.358 kb on - strand, within AO356_10250 at 2313.663 kb on + strand, within AO356_10250 at 2313.663 kb on + strand, within AO356_10250 at 2313.664 kb on - strand, within AO356_10250 at 2313.764 kb on + strand, within AO356_10250 at 2313.764 kb on + strand, within AO356_10250 at 2313.764 kb on + strand, within AO356_10250 at 2313.764 kb on + strand, within AO356_10250 at 2313.764 kb on + strand, within AO356_10250 at 2313.765 kb on - strand, within AO356_10250 at 2313.765 kb on - strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.825 kb on + strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.826 kb on - strand, within AO356_10250 at 2313.966 kb on + strand at 2313.966 kb on + strand at 2313.966 kb on + strand at 2313.967 kb on - strand at 2313.967 kb on - strand at 2313.967 kb on - strand at 2313.967 kb on - strand at 2313.967 kb on - strand at 2314.098 kb on + strand at 2314.098 kb on + strand at 2314.098 kb on + strand at 2314.098 kb on + strand at 2314.099 kb on - strand at 2314.099 kb on - strand at 2314.099 kb on - strand at 2314.099 kb on - strand at 2314.107 kb on + strand at 2314.109 kb on + strand at 2314.155 kb on + strand at 2314.179 kb on + strand at 2314.179 kb on + strand at 2314.180 kb on - strand at 2314.180 kb on - strand at 2314.180 kb on - strand at 2314.180 kb on - strand at 2314.232 kb on - strand at 2314.263 kb on - strand at 2314.263 kb on - strand at 2314.298 kb on + strand at 2314.298 kb on + strand at 2314.299 kb on - strand at 2314.299 kb on - strand at 2314.299 kb on - strand at 2314.299 kb on - strand at 2314.528 kb on + strand, within AO356_10255 at 2314.568 kb on + strand, within AO356_10255 at 2314.569 kb on - strand, within AO356_10255 at 2314.811 kb on - strand, within AO356_10255
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 2,312,698 - +0.9 2,312,735 + +0.0 2,312,736 - -0.9 2,312,736 - +0.3 2,312,810 + +0.3 2,312,813 - -0.3 2,312,824 + +2.2 2,312,828 + -0.7 2,312,828 + +0.0 2,312,828 + -0.5 2,312,829 - -0.7 2,312,831 - -0.8 2,312,870 + -1.7 2,312,871 - +0.3 2,312,871 - -2.4 2,312,949 + -2.5 2,312,949 + +0.3 2,312,949 + -0.7 2,312,950 - +0.3 2,312,950 - +0.2 2,312,950 - -1.2 2,312,950 - -0.2 2,312,962 + +0.3 2,312,963 - -0.2 2,312,963 - +1.3 2,312,963 - -1.0 2,312,963 - +0.1 2,312,963 - -0.1 2,312,993 + +1.3 2,312,993 + +0.3 2,313,037 - +0.2 2,313,037 - -0.2 2,313,037 - -0.7 2,313,041 - +0.3 2,313,065 - +0.3 2,313,086 - +0.3 2,313,109 - -1.5 2,313,121 + -0.2 2,313,122 - -1.1 2,313,168 + +1.3 2,313,169 - +0.3 2,313,203 + +0.1 2,313,203 + +0.8 2,313,203 + -0.7 2,313,203 + -0.0 2,313,203 + +0.0 2,313,204 - +0.3 2,313,204 - +0.8 2,313,204 - +0.2 2,313,204 - +0.7 2,313,204 - +0.1 2,313,204 - +1.3 2,313,204 - +1.0 2,313,204 - -0.0 2,313,204 - -0.7 2,313,254 + -0.0 2,313,254 + +0.2 2,313,255 - -0.0 2,313,266 + -0.2 2,313,266 + -0.2 2,313,266 + -0.1 2,313,266 + -2.2 2,313,266 + +0.9 2,313,266 + -1.7 2,313,266 + -0.2 2,313,297 - AO356_10250 0.13 +1.0 2,313,297 - AO356_10250 0.13 -1.7 2,313,297 - AO356_10250 0.13 -0.7 2,313,357 + AO356_10250 0.21 +0.1 2,313,357 + AO356_10250 0.21 -0.7 2,313,357 + AO356_10250 0.21 -1.0 2,313,358 - AO356_10250 0.21 -1.2 2,313,358 - AO356_10250 0.21 -0.0 2,313,358 - AO356_10250 0.21 +0.8 2,313,663 + AO356_10250 0.61 -0.0 2,313,663 + AO356_10250 0.61 -1.2 2,313,664 - AO356_10250 0.61 -0.5 2,313,764 + AO356_10250 0.74 +0.3 2,313,764 + AO356_10250 0.74 -0.8 2,313,764 + AO356_10250 0.74 -0.3 2,313,764 + AO356_10250 0.74 -0.2 2,313,764 + AO356_10250 0.74 -0.5 2,313,765 - AO356_10250 0.74 +0.3 2,313,765 - AO356_10250 0.74 -1.5 2,313,825 + AO356_10250 0.82 -1.4 2,313,825 + AO356_10250 0.82 -0.7 2,313,825 + AO356_10250 0.82 +1.0 2,313,825 + AO356_10250 0.82 -0.1 2,313,825 + AO356_10250 0.82 -0.2 2,313,825 + AO356_10250 0.82 +0.3 2,313,825 + AO356_10250 0.82 -0.4 2,313,826 - AO356_10250 0.82 -0.3 2,313,826 - AO356_10250 0.82 -0.1 2,313,826 - AO356_10250 0.82 +0.4 2,313,826 - AO356_10250 0.82 -0.3 2,313,826 - AO356_10250 0.82 +0.2 2,313,826 - AO356_10250 0.82 +0.0 2,313,966 + +0.3 2,313,966 + -0.3 2,313,966 + +0.2 2,313,967 - -0.1 2,313,967 - +0.7 2,313,967 - +0.1 2,313,967 - -1.4 2,313,967 - +0.5 2,314,098 + -1.1 2,314,098 + -0.0 2,314,098 + +0.6 2,314,098 + +0.6 2,314,099 - -0.1 2,314,099 - +0.2 2,314,099 - +0.3 2,314,099 - +1.5 2,314,107 + -0.0 2,314,109 + -1.5 2,314,155 + +0.0 2,314,179 + +0.6 2,314,179 + +0.6 2,314,180 - -0.5 2,314,180 - -0.5 2,314,180 - -0.1 2,314,180 - +0.6 2,314,232 - -0.1 2,314,263 - -0.2 2,314,263 - +0.0 2,314,298 + -0.1 2,314,298 + +0.3 2,314,299 - +1.0 2,314,299 - +0.3 2,314,299 - -0.5 2,314,299 - +1.0 2,314,528 + AO356_10255 0.18 +0.6 2,314,568 + AO356_10255 0.22 -0.9 2,314,569 - AO356_10255 0.22 +0.2 2,314,811 - AO356_10255 0.41 +0.5
Or see this region's nucleotide sequence