Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09725 and AO356_09730 overlap by 4 nucleotides AO356_09730 and AO356_09735 are separated by 85 nucleotides AO356_09735 and AO356_09740 overlap by 4 nucleotides
AO356_09725: AO356_09725 - histidine kinase, at 2,207,340 to 2,208,425
_09725
AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858
_09730
AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780
_09735
AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079
_09740
Position (kb)
2208
2209
2210 Strain fitness (log2 ratio)
-2
-1
0
1 at 2207.427 kb on + strand at 2207.427 kb on + strand at 2207.427 kb on + strand at 2207.427 kb on + strand at 2207.428 kb on - strand at 2207.428 kb on - strand at 2207.428 kb on - strand at 2207.619 kb on + strand, within AO356_09725 at 2207.620 kb on - strand, within AO356_09725 at 2207.791 kb on + strand, within AO356_09725 at 2207.792 kb on - strand, within AO356_09725 at 2207.792 kb on - strand, within AO356_09725 at 2207.847 kb on + strand, within AO356_09725 at 2207.847 kb on + strand, within AO356_09725 at 2207.847 kb on + strand, within AO356_09725 at 2207.847 kb on + strand, within AO356_09725 at 2207.848 kb on - strand, within AO356_09725 at 2207.848 kb on - strand, within AO356_09725 at 2207.848 kb on - strand, within AO356_09725 at 2208.019 kb on - strand, within AO356_09725 at 2208.466 kb on + strand at 2208.466 kb on + strand at 2208.466 kb on + strand at 2208.466 kb on + strand at 2208.704 kb on + strand, within AO356_09730 at 2208.705 kb on - strand, within AO356_09730 at 2208.725 kb on + strand, within AO356_09730 at 2209.225 kb on + strand, within AO356_09730 at 2209.225 kb on + strand, within AO356_09730 at 2209.226 kb on - strand, within AO356_09730 at 2209.226 kb on - strand, within AO356_09730 at 2209.226 kb on - strand, within AO356_09730 at 2209.345 kb on + strand, within AO356_09730 at 2209.345 kb on + strand, within AO356_09730 at 2209.463 kb on + strand, within AO356_09730 at 2209.463 kb on + strand, within AO356_09730 at 2209.464 kb on - strand, within AO356_09730 at 2209.783 kb on + strand at 2209.783 kb on + strand at 2209.784 kb on - strand at 2209.784 kb on - strand at 2209.784 kb on - strand at 2209.784 kb on - strand at 2209.784 kb on - strand at 2209.867 kb on + strand at 2209.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 2,207,427 + +0.5 2,207,427 + +0.3 2,207,427 + -0.5 2,207,427 + +0.2 2,207,428 - +0.3 2,207,428 - -2.5 2,207,428 - -2.2 2,207,619 + AO356_09725 0.26 -1.0 2,207,620 - AO356_09725 0.26 -1.7 2,207,791 + AO356_09725 0.42 -1.0 2,207,792 - AO356_09725 0.42 -1.5 2,207,792 - AO356_09725 0.42 -1.5 2,207,847 + AO356_09725 0.47 -0.0 2,207,847 + AO356_09725 0.47 -1.1 2,207,847 + AO356_09725 0.47 -0.1 2,207,847 + AO356_09725 0.47 -0.3 2,207,848 - AO356_09725 0.47 -0.1 2,207,848 - AO356_09725 0.47 -0.7 2,207,848 - AO356_09725 0.47 -1.8 2,208,019 - AO356_09725 0.63 -2.5 2,208,466 + -0.7 2,208,466 + -0.7 2,208,466 + -1.2 2,208,466 + -1.0 2,208,704 + AO356_09730 0.20 -2.1 2,208,705 - AO356_09730 0.20 -0.8 2,208,725 + AO356_09730 0.21 -1.8 2,209,225 + AO356_09730 0.56 -2.7 2,209,225 + AO356_09730 0.56 -1.7 2,209,226 - AO356_09730 0.56 -1.1 2,209,226 - AO356_09730 0.56 -0.3 2,209,226 - AO356_09730 0.56 -0.1 2,209,345 + AO356_09730 0.64 -1.5 2,209,345 + AO356_09730 0.64 +0.1 2,209,463 + AO356_09730 0.72 -0.2 2,209,463 + AO356_09730 0.72 +0.2 2,209,464 - AO356_09730 0.73 -0.7 2,209,783 + -1.5 2,209,783 + -1.7 2,209,784 - -1.8 2,209,784 - -1.7 2,209,784 - +0.0 2,209,784 - +0.3 2,209,784 - -1.5 2,209,867 + +0.8 2,209,921 - +0.8
Or see this region's nucleotide sequence