Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04480 and AO356_04485 are separated by 100 nucleotides AO356_04485 and AO356_04490 are separated by 171 nucleotides
AO356_04480: AO356_04480 - AraC family transcriptional regulator, at 1,013,838 to 1,014,644
_04480
AO356_04485: AO356_04485 - cupin, at 1,014,745 to 1,015,113
_04485
AO356_04490: AO356_04490 - chemotaxis protein, at 1,015,285 to 1,016,919
_04490
Position (kb)
1014
1015
1016 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1013.760 kb on + strand at 1013.760 kb on + strand at 1013.805 kb on - strand at 1013.805 kb on - strand at 1013.810 kb on - strand at 1013.810 kb on - strand at 1013.810 kb on - strand at 1013.812 kb on - strand at 1013.812 kb on - strand at 1013.913 kb on + strand at 1013.913 kb on + strand at 1013.913 kb on + strand at 1013.913 kb on + strand at 1013.914 kb on - strand at 1013.914 kb on - strand at 1013.914 kb on - strand at 1013.931 kb on + strand, within AO356_04480 at 1013.932 kb on - strand, within AO356_04480 at 1013.955 kb on + strand, within AO356_04480 at 1013.955 kb on + strand, within AO356_04480 at 1013.955 kb on + strand, within AO356_04480 at 1013.955 kb on + strand, within AO356_04480 at 1013.955 kb on + strand, within AO356_04480 at 1013.956 kb on - strand, within AO356_04480 at 1013.956 kb on - strand, within AO356_04480 at 1013.956 kb on - strand, within AO356_04480 at 1013.956 kb on - strand, within AO356_04480 at 1013.997 kb on + strand, within AO356_04480 at 1013.998 kb on - strand, within AO356_04480 at 1014.017 kb on + strand, within AO356_04480 at 1014.017 kb on + strand, within AO356_04480 at 1014.018 kb on - strand, within AO356_04480 at 1014.097 kb on - strand, within AO356_04480 at 1014.108 kb on + strand, within AO356_04480 at 1014.108 kb on + strand, within AO356_04480 at 1014.108 kb on + strand, within AO356_04480 at 1014.108 kb on + strand, within AO356_04480 at 1014.108 kb on + strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.109 kb on - strand, within AO356_04480 at 1014.110 kb on + strand, within AO356_04480 at 1014.110 kb on + strand, within AO356_04480 at 1014.110 kb on + strand, within AO356_04480 at 1014.111 kb on - strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.112 kb on + strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.113 kb on - strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.267 kb on + strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.268 kb on - strand, within AO356_04480 at 1014.477 kb on + strand, within AO356_04480 at 1014.477 kb on + strand, within AO356_04480 at 1014.477 kb on + strand, within AO356_04480 at 1014.477 kb on + strand, within AO356_04480 at 1014.477 kb on + strand, within AO356_04480 at 1014.478 kb on - strand, within AO356_04480 at 1014.478 kb on - strand, within AO356_04480 at 1014.478 kb on - strand, within AO356_04480 at 1014.478 kb on - strand, within AO356_04480 at 1014.478 kb on - strand, within AO356_04480 at 1014.528 kb on - strand, within AO356_04480 at 1014.593 kb on + strand at 1014.593 kb on + strand at 1014.593 kb on + strand at 1014.593 kb on + strand at 1014.594 kb on - strand at 1014.594 kb on - strand at 1014.594 kb on - strand at 1014.594 kb on - strand at 1014.594 kb on - strand at 1014.608 kb on + strand at 1014.642 kb on + strand at 1014.642 kb on + strand at 1014.643 kb on - strand at 1014.707 kb on + strand at 1014.707 kb on + strand at 1014.707 kb on + strand at 1014.708 kb on - strand at 1014.708 kb on - strand at 1014.712 kb on + strand at 1014.712 kb on + strand at 1014.713 kb on - strand at 1014.781 kb on + strand at 1014.781 kb on + strand at 1014.782 kb on - strand, within AO356_04485 at 1014.782 kb on - strand, within AO356_04485 at 1014.782 kb on - strand, within AO356_04485 at 1014.782 kb on - strand, within AO356_04485 at 1014.835 kb on + strand, within AO356_04485 at 1014.835 kb on + strand, within AO356_04485 at 1014.976 kb on + strand, within AO356_04485 at 1014.976 kb on + strand, within AO356_04485 at 1014.976 kb on + strand, within AO356_04485 at 1014.976 kb on + strand, within AO356_04485 at 1014.976 kb on + strand, within AO356_04485 at 1014.977 kb on - strand, within AO356_04485 at 1014.977 kb on - strand, within AO356_04485 at 1014.977 kb on - strand, within AO356_04485 at 1014.977 kb on - strand, within AO356_04485 at 1015.002 kb on + strand, within AO356_04485 at 1015.002 kb on + strand, within AO356_04485 at 1015.002 kb on + strand, within AO356_04485 at 1015.002 kb on + strand, within AO356_04485 at 1015.002 kb on + strand, within AO356_04485 at 1015.003 kb on - strand, within AO356_04485 at 1015.003 kb on - strand, within AO356_04485 at 1015.290 kb on + strand at 1015.291 kb on - strand at 1015.959 kb on + strand, within AO356_04490 at 1015.959 kb on + strand, within AO356_04490
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 1,013,760 + -0.2 1,013,760 + -0.8 1,013,805 - +0.4 1,013,805 - -1.0 1,013,810 - -0.3 1,013,810 - -0.3 1,013,810 - -0.9 1,013,812 - +1.2 1,013,812 - -0.4 1,013,913 + +0.4 1,013,913 + +0.5 1,013,913 + -0.9 1,013,913 + +1.0 1,013,914 - -0.6 1,013,914 - -0.2 1,013,914 - -0.8 1,013,931 + AO356_04480 0.12 +1.0 1,013,932 - AO356_04480 0.12 +0.7 1,013,955 + AO356_04480 0.14 +0.1 1,013,955 + AO356_04480 0.14 -0.4 1,013,955 + AO356_04480 0.14 +0.4 1,013,955 + AO356_04480 0.14 +0.7 1,013,955 + AO356_04480 0.14 -0.5 1,013,956 - AO356_04480 0.15 -1.4 1,013,956 - AO356_04480 0.15 +0.4 1,013,956 - AO356_04480 0.15 -0.0 1,013,956 - AO356_04480 0.15 +2.0 1,013,997 + AO356_04480 0.20 -0.0 1,013,998 - AO356_04480 0.20 +1.5 1,014,017 + AO356_04480 0.22 +1.2 1,014,017 + AO356_04480 0.22 -0.5 1,014,018 - AO356_04480 0.22 +1.2 1,014,097 - AO356_04480 0.32 -0.0 1,014,108 + AO356_04480 0.33 +0.5 1,014,108 + AO356_04480 0.33 +0.1 1,014,108 + AO356_04480 0.33 -0.6 1,014,108 + AO356_04480 0.33 -1.8 1,014,108 + AO356_04480 0.33 -0.9 1,014,109 - AO356_04480 0.34 +0.5 1,014,109 - AO356_04480 0.34 -0.3 1,014,109 - AO356_04480 0.34 -0.2 1,014,109 - AO356_04480 0.34 +0.1 1,014,109 - AO356_04480 0.34 +0.7 1,014,109 - AO356_04480 0.34 -1.0 1,014,109 - AO356_04480 0.34 -1.3 1,014,109 - AO356_04480 0.34 -0.2 1,014,109 - AO356_04480 0.34 -1.0 1,014,110 + AO356_04480 0.34 +0.4 1,014,110 + AO356_04480 0.34 +0.5 1,014,110 + AO356_04480 0.34 +1.1 1,014,111 - AO356_04480 0.34 -0.2 1,014,112 + AO356_04480 0.34 +0.5 1,014,112 + AO356_04480 0.34 -0.6 1,014,112 + AO356_04480 0.34 +0.2 1,014,112 + AO356_04480 0.34 +0.7 1,014,112 + AO356_04480 0.34 -0.4 1,014,112 + AO356_04480 0.34 +1.3 1,014,113 - AO356_04480 0.34 -0.5 1,014,113 - AO356_04480 0.34 +0.6 1,014,113 - AO356_04480 0.34 -1.3 1,014,113 - AO356_04480 0.34 -0.7 1,014,113 - AO356_04480 0.34 -0.3 1,014,113 - AO356_04480 0.34 -1.6 1,014,113 - AO356_04480 0.34 -0.4 1,014,267 + AO356_04480 0.53 +0.8 1,014,267 + AO356_04480 0.53 +0.1 1,014,267 + AO356_04480 0.53 +0.6 1,014,267 + AO356_04480 0.53 +1.3 1,014,267 + AO356_04480 0.53 +0.6 1,014,267 + AO356_04480 0.53 +0.4 1,014,267 + AO356_04480 0.53 +0.5 1,014,267 + AO356_04480 0.53 -0.3 1,014,268 - AO356_04480 0.53 +0.6 1,014,268 - AO356_04480 0.53 +0.3 1,014,268 - AO356_04480 0.53 -0.8 1,014,268 - AO356_04480 0.53 -2.0 1,014,268 - AO356_04480 0.53 +0.1 1,014,268 - AO356_04480 0.53 +0.4 1,014,477 + AO356_04480 0.79 -0.3 1,014,477 + AO356_04480 0.79 +0.5 1,014,477 + AO356_04480 0.79 +1.1 1,014,477 + AO356_04480 0.79 +1.0 1,014,477 + AO356_04480 0.79 -2.0 1,014,478 - AO356_04480 0.79 -0.2 1,014,478 - AO356_04480 0.79 -0.7 1,014,478 - AO356_04480 0.79 -0.4 1,014,478 - AO356_04480 0.79 +0.5 1,014,478 - AO356_04480 0.79 -0.6 1,014,528 - AO356_04480 0.86 -0.2 1,014,593 + +0.5 1,014,593 + -0.9 1,014,593 + +0.2 1,014,593 + -0.0 1,014,594 - +1.4 1,014,594 - -0.2 1,014,594 - +1.8 1,014,594 - -0.5 1,014,594 - -0.0 1,014,608 + +2.1 1,014,642 + -1.5 1,014,642 + +0.6 1,014,643 - -0.0 1,014,707 + -0.2 1,014,707 + +0.5 1,014,707 + +0.1 1,014,708 - +0.8 1,014,708 - +0.5 1,014,712 + +0.1 1,014,712 + -0.5 1,014,713 - -0.3 1,014,781 + -0.4 1,014,781 + -0.6 1,014,782 - AO356_04485 0.10 -0.6 1,014,782 - AO356_04485 0.10 -0.3 1,014,782 - AO356_04485 0.10 -0.2 1,014,782 - AO356_04485 0.10 -0.8 1,014,835 + AO356_04485 0.24 +0.7 1,014,835 + AO356_04485 0.24 +0.0 1,014,976 + AO356_04485 0.63 -0.3 1,014,976 + AO356_04485 0.63 -1.0 1,014,976 + AO356_04485 0.63 -0.7 1,014,976 + AO356_04485 0.63 -0.0 1,014,976 + AO356_04485 0.63 -1.2 1,014,977 - AO356_04485 0.63 -0.5 1,014,977 - AO356_04485 0.63 -0.2 1,014,977 - AO356_04485 0.63 -1.1 1,014,977 - AO356_04485 0.63 +0.2 1,015,002 + AO356_04485 0.70 +0.2 1,015,002 + AO356_04485 0.70 +0.3 1,015,002 + AO356_04485 0.70 -0.0 1,015,002 + AO356_04485 0.70 +0.1 1,015,002 + AO356_04485 0.70 -0.2 1,015,003 - AO356_04485 0.70 -0.7 1,015,003 - AO356_04485 0.70 -0.2 1,015,290 + +0.1 1,015,291 - -0.5 1,015,959 + AO356_04490 0.41 -0.0 1,015,959 + AO356_04490 0.41 +0.3
Or see this region's nucleotide sequence