Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01915

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01910 and AO356_01915 are separated by 608 nucleotidesAO356_01915 and AO356_01925 are separated by 955 nucleotides AO356_01910: AO356_01910 - LysR family transcriptional regulator, at 424,768 to 425,703 _01910 AO356_01915: AO356_01915 - hypothetical protein, at 426,312 to 426,587 _01915 AO356_01925: AO356_01925 - hypothetical protein, at 427,543 to 427,905 _01925 Position (kb) 426 427Strain fitness (log2 ratio) -2 -1 0 1 2at 425.356 kb on + strand, within AO356_01910at 425.365 kb on + strand, within AO356_01910at 425.366 kb on - strand, within AO356_01910at 425.366 kb on - strand, within AO356_01910at 425.368 kb on - strand, within AO356_01910at 425.446 kb on + strand, within AO356_01910at 425.602 kb on + strand, within AO356_01910at 425.603 kb on - strand, within AO356_01910at 425.603 kb on - strand, within AO356_01910at 425.603 kb on - strand, within AO356_01910at 425.603 kb on - strand, within AO356_01910at 425.735 kb on + strandat 425.736 kb on - strandat 425.736 kb on - strandat 425.739 kb on + strandat 425.740 kb on - strandat 425.740 kb on - strandat 425.751 kb on - strandat 425.858 kb on + strandat 425.859 kb on - strandat 425.859 kb on - strandat 425.859 kb on - strandat 425.859 kb on - strandat 425.871 kb on + strandat 425.872 kb on - strandat 425.872 kb on - strandat 425.872 kb on - strandat 425.872 kb on - strandat 425.872 kb on - strandat 425.991 kb on + strandat 425.991 kb on + strandat 425.991 kb on + strandat 425.991 kb on + strandat 425.992 kb on - strandat 425.992 kb on - strandat 425.992 kb on - strandat 425.992 kb on - strandat 425.992 kb on - strandat 426.007 kb on - strandat 426.131 kb on + strandat 426.131 kb on + strandat 426.132 kb on - strandat 426.132 kb on - strandat 426.414 kb on + strand, within AO356_01915at 426.415 kb on - strand, within AO356_01915at 426.462 kb on + strand, within AO356_01915at 426.566 kb on + strandat 426.567 kb on - strandat 426.569 kb on + strandat 426.570 kb on - strandat 426.577 kb on + strandat 426.577 kb on + strandat 426.577 kb on + strandat 426.578 kb on - strandat 426.578 kb on - strandat 426.596 kb on - strandat 426.704 kb on + strandat 426.772 kb on + strandat 426.773 kb on - strandat 426.773 kb on - strandat 426.773 kb on - strandat 426.773 kb on - strandat 426.776 kb on + strandat 426.776 kb on + strandat 426.776 kb on + strandat 426.776 kb on + strandat 426.776 kb on + strandat 426.777 kb on - strandat 426.777 kb on - strandat 426.777 kb on - strandat 426.777 kb on - strandat 426.777 kb on - strandat 426.777 kb on - strandat 426.781 kb on + strandat 426.781 kb on + strandat 426.782 kb on - strandat 426.782 kb on - strandat 426.785 kb on + strandat 426.785 kb on + strandat 426.785 kb on + strandat 426.786 kb on - strandat 426.786 kb on - strandat 426.786 kb on - strandat 426.830 kb on - strandat 426.855 kb on + strandat 426.856 kb on - strandat 426.856 kb on - strandat 426.856 kb on - strandat 426.897 kb on + strandat 426.903 kb on - strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.934 kb on + strandat 426.939 kb on + strandat 426.939 kb on + strandat 426.955 kb on + strandat 426.955 kb on + strandat 427.013 kb on + strandat 427.029 kb on + strandat 427.029 kb on + strandat 427.029 kb on + strandat 427.029 kb on + strandat 427.029 kb on + strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.030 kb on - strandat 427.159 kb on + strandat 427.159 kb on + strandat 427.159 kb on + strandat 427.183 kb on + strandat 427.184 kb on - strandat 427.245 kb on - strandat 427.251 kb on - strandat 427.286 kb on + strandat 427.286 kb on + strandat 427.286 kb on + strandat 427.286 kb on + strandat 427.287 kb on - strandat 427.287 kb on - strandat 427.309 kb on + strandat 427.414 kb on - strandat 427.442 kb on + strandat 427.442 kb on + strandat 427.443 kb on - strandat 427.443 kb on - strandat 427.443 kb on - strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.456 kb on + strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.457 kb on - strandat 427.462 kb on + strandat 427.463 kb on - strandat 427.463 kb on - strandat 427.488 kb on + strandat 427.502 kb on + strandat 427.502 kb on + strandat 427.520 kb on + strandat 427.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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425,356 + AO356_01910 0.63 +1.0
425,365 + AO356_01910 0.64 -0.6
425,366 - AO356_01910 0.64 +1.9
425,366 - AO356_01910 0.64 +0.9
425,368 - AO356_01910 0.64 +0.3
425,446 + AO356_01910 0.72 -0.3
425,602 + AO356_01910 0.89 +2.5
425,603 - AO356_01910 0.89 +0.4
425,603 - AO356_01910 0.89 -1.0
425,603 - AO356_01910 0.89 -1.0
425,603 - AO356_01910 0.89 -0.5
425,735 + -0.4
425,736 - -0.7
425,736 - -0.6
425,739 + +0.4
425,740 - -0.3
425,740 - -0.0
425,751 - +0.6
425,858 + -0.1
425,859 - -0.1
425,859 - +0.6
425,859 - +0.2
425,859 - -0.1
425,871 + +1.3
425,872 - +0.3
425,872 - -1.3
425,872 - +0.3
425,872 - +0.5
425,872 - -1.7
425,991 + +2.5
425,991 + +0.7
425,991 + -0.4
425,991 + -1.3
425,992 - +1.0
425,992 - -0.5
425,992 - -1.3
425,992 - +0.3
425,992 - +1.4
426,007 - +0.6
426,131 + +0.4
426,131 + -0.4
426,132 - -1.3
426,132 - -0.6
426,414 + AO356_01915 0.37 +0.6
426,415 - AO356_01915 0.37 +0.6
426,462 + AO356_01915 0.54 +0.6
426,566 + +0.6
426,567 - +0.1
426,569 + -0.1
426,570 - -0.1
426,577 + -1.2
426,577 + -0.1
426,577 + -0.6
426,578 - +0.3
426,578 - -0.4
426,596 - -0.3
426,704 + -0.3
426,772 + -1.0
426,773 - -1.0
426,773 - -1.0
426,773 - -0.3
426,773 - -0.1
426,776 + +0.8
426,776 + +0.2
426,776 + -0.1
426,776 + -0.3
426,776 + -0.5
426,777 - +0.0
426,777 - +0.9
426,777 - +0.7
426,777 - +0.2
426,777 - -0.1
426,777 - +0.5
426,781 + -0.6
426,781 + -0.8
426,782 - -0.1
426,782 - -0.4
426,785 + +0.5
426,785 + +0.2
426,785 + -0.6
426,786 - -0.5
426,786 - -0.1
426,786 - -2.1
426,830 - -1.7
426,855 + +0.9
426,856 - +0.9
426,856 - -1.1
426,856 - +0.3
426,897 + -0.9
426,903 - -0.1
426,914 + +0.1
426,914 + +0.8
426,934 + -0.4
426,939 + -0.4
426,939 + +1.1
426,955 + +0.6
426,955 + -1.1
427,013 + -0.3
427,029 + -0.6
427,029 + -0.4
427,029 + -1.1
427,029 + +1.7
427,029 + +0.0
427,030 - +0.9
427,030 - -0.2
427,030 - -1.1
427,030 - +0.1
427,030 - +0.7
427,030 - -0.5
427,030 - -0.1
427,030 - +0.1
427,159 + +0.1
427,159 + +0.3
427,159 + +0.3
427,183 + +0.5
427,184 - +0.7
427,245 - -0.3
427,251 - -1.7
427,286 + -0.6
427,286 + -0.1
427,286 + -1.1
427,286 + -0.1
427,287 - +1.0
427,287 - +0.5
427,309 + -0.5
427,414 - -1.1
427,442 + +0.7
427,442 + +0.6
427,443 - +0.5
427,443 - +1.7
427,443 - +0.7
427,456 + +0.6
427,456 + +0.5
427,456 + -0.6
427,456 + +0.7
427,456 + -0.5
427,456 + -1.0
427,456 + -0.5
427,456 + -0.3
427,456 + +0.3
427,456 + +0.1
427,456 + +0.2
427,457 - +0.9
427,457 - +0.6
427,457 - -0.3
427,457 - +0.8
427,457 - -1.1
427,457 - +1.5
427,457 - +0.2
427,457 - -0.0
427,457 - +1.1
427,462 + +0.5
427,463 - -1.7
427,463 - +0.1
427,488 + +0.7
427,502 + +0.5
427,502 + -0.1
427,520 + -0.5
427,556 - -0.1

Or see this region's nucleotide sequence