Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01910 and AO356_01915 are separated by 608 nucleotides AO356_01915 and AO356_01925 are separated by 955 nucleotides
AO356_01910: AO356_01910 - LysR family transcriptional regulator, at 424,768 to 425,703
_01910
AO356_01915: AO356_01915 - hypothetical protein, at 426,312 to 426,587
_01915
AO356_01925: AO356_01925 - hypothetical protein, at 427,543 to 427,905
_01925
Position (kb)
426
427 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 425.356 kb on + strand, within AO356_01910 at 425.365 kb on + strand, within AO356_01910 at 425.366 kb on - strand, within AO356_01910 at 425.366 kb on - strand, within AO356_01910 at 425.368 kb on - strand, within AO356_01910 at 425.446 kb on + strand, within AO356_01910 at 425.602 kb on + strand, within AO356_01910 at 425.603 kb on - strand, within AO356_01910 at 425.603 kb on - strand, within AO356_01910 at 425.603 kb on - strand, within AO356_01910 at 425.603 kb on - strand, within AO356_01910 at 425.735 kb on + strand at 425.736 kb on - strand at 425.736 kb on - strand at 425.739 kb on + strand at 425.740 kb on - strand at 425.740 kb on - strand at 425.751 kb on - strand at 425.858 kb on + strand at 425.859 kb on - strand at 425.859 kb on - strand at 425.859 kb on - strand at 425.859 kb on - strand at 425.871 kb on + strand at 425.872 kb on - strand at 425.872 kb on - strand at 425.872 kb on - strand at 425.872 kb on - strand at 425.872 kb on - strand at 425.991 kb on + strand at 425.991 kb on + strand at 425.991 kb on + strand at 425.991 kb on + strand at 425.992 kb on - strand at 425.992 kb on - strand at 425.992 kb on - strand at 425.992 kb on - strand at 425.992 kb on - strand at 426.007 kb on - strand at 426.131 kb on + strand at 426.131 kb on + strand at 426.132 kb on - strand at 426.132 kb on - strand at 426.414 kb on + strand, within AO356_01915 at 426.415 kb on - strand, within AO356_01915 at 426.462 kb on + strand, within AO356_01915 at 426.566 kb on + strand at 426.567 kb on - strand at 426.569 kb on + strand at 426.570 kb on - strand at 426.577 kb on + strand at 426.577 kb on + strand at 426.577 kb on + strand at 426.578 kb on - strand at 426.578 kb on - strand at 426.596 kb on - strand at 426.704 kb on + strand at 426.772 kb on + strand at 426.773 kb on - strand at 426.773 kb on - strand at 426.773 kb on - strand at 426.773 kb on - strand at 426.776 kb on + strand at 426.776 kb on + strand at 426.776 kb on + strand at 426.776 kb on + strand at 426.776 kb on + strand at 426.777 kb on - strand at 426.777 kb on - strand at 426.777 kb on - strand at 426.777 kb on - strand at 426.777 kb on - strand at 426.777 kb on - strand at 426.781 kb on + strand at 426.781 kb on + strand at 426.782 kb on - strand at 426.782 kb on - strand at 426.785 kb on + strand at 426.785 kb on + strand at 426.785 kb on + strand at 426.786 kb on - strand at 426.786 kb on - strand at 426.786 kb on - strand at 426.830 kb on - strand at 426.855 kb on + strand at 426.856 kb on - strand at 426.856 kb on - strand at 426.856 kb on - strand at 426.897 kb on + strand at 426.903 kb on - strand at 426.914 kb on + strand at 426.914 kb on + strand at 426.934 kb on + strand at 426.939 kb on + strand at 426.939 kb on + strand at 426.955 kb on + strand at 426.955 kb on + strand at 427.013 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.159 kb on + strand at 427.159 kb on + strand at 427.159 kb on + strand at 427.183 kb on + strand at 427.184 kb on - strand at 427.245 kb on - strand at 427.251 kb on - strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.287 kb on - strand at 427.287 kb on - strand at 427.309 kb on + strand at 427.414 kb on - strand at 427.442 kb on + strand at 427.442 kb on + strand at 427.443 kb on - strand at 427.443 kb on - strand at 427.443 kb on - strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.462 kb on + strand at 427.463 kb on - strand at 427.463 kb on - strand at 427.488 kb on + strand at 427.502 kb on + strand at 427.502 kb on + strand at 427.520 kb on + strand at 427.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 425,356 + AO356_01910 0.63 +1.0 425,365 + AO356_01910 0.64 -0.6 425,366 - AO356_01910 0.64 +1.9 425,366 - AO356_01910 0.64 +0.9 425,368 - AO356_01910 0.64 +0.3 425,446 + AO356_01910 0.72 -0.3 425,602 + AO356_01910 0.89 +2.5 425,603 - AO356_01910 0.89 +0.4 425,603 - AO356_01910 0.89 -1.0 425,603 - AO356_01910 0.89 -1.0 425,603 - AO356_01910 0.89 -0.5 425,735 + -0.4 425,736 - -0.7 425,736 - -0.6 425,739 + +0.4 425,740 - -0.3 425,740 - -0.0 425,751 - +0.6 425,858 + -0.1 425,859 - -0.1 425,859 - +0.6 425,859 - +0.2 425,859 - -0.1 425,871 + +1.3 425,872 - +0.3 425,872 - -1.3 425,872 - +0.3 425,872 - +0.5 425,872 - -1.7 425,991 + +2.5 425,991 + +0.7 425,991 + -0.4 425,991 + -1.3 425,992 - +1.0 425,992 - -0.5 425,992 - -1.3 425,992 - +0.3 425,992 - +1.4 426,007 - +0.6 426,131 + +0.4 426,131 + -0.4 426,132 - -1.3 426,132 - -0.6 426,414 + AO356_01915 0.37 +0.6 426,415 - AO356_01915 0.37 +0.6 426,462 + AO356_01915 0.54 +0.6 426,566 + +0.6 426,567 - +0.1 426,569 + -0.1 426,570 - -0.1 426,577 + -1.2 426,577 + -0.1 426,577 + -0.6 426,578 - +0.3 426,578 - -0.4 426,596 - -0.3 426,704 + -0.3 426,772 + -1.0 426,773 - -1.0 426,773 - -1.0 426,773 - -0.3 426,773 - -0.1 426,776 + +0.8 426,776 + +0.2 426,776 + -0.1 426,776 + -0.3 426,776 + -0.5 426,777 - +0.0 426,777 - +0.9 426,777 - +0.7 426,777 - +0.2 426,777 - -0.1 426,777 - +0.5 426,781 + -0.6 426,781 + -0.8 426,782 - -0.1 426,782 - -0.4 426,785 + +0.5 426,785 + +0.2 426,785 + -0.6 426,786 - -0.5 426,786 - -0.1 426,786 - -2.1 426,830 - -1.7 426,855 + +0.9 426,856 - +0.9 426,856 - -1.1 426,856 - +0.3 426,897 + -0.9 426,903 - -0.1 426,914 + +0.1 426,914 + +0.8 426,934 + -0.4 426,939 + -0.4 426,939 + +1.1 426,955 + +0.6 426,955 + -1.1 427,013 + -0.3 427,029 + -0.6 427,029 + -0.4 427,029 + -1.1 427,029 + +1.7 427,029 + +0.0 427,030 - +0.9 427,030 - -0.2 427,030 - -1.1 427,030 - +0.1 427,030 - +0.7 427,030 - -0.5 427,030 - -0.1 427,030 - +0.1 427,159 + +0.1 427,159 + +0.3 427,159 + +0.3 427,183 + +0.5 427,184 - +0.7 427,245 - -0.3 427,251 - -1.7 427,286 + -0.6 427,286 + -0.1 427,286 + -1.1 427,286 + -0.1 427,287 - +1.0 427,287 - +0.5 427,309 + -0.5 427,414 - -1.1 427,442 + +0.7 427,442 + +0.6 427,443 - +0.5 427,443 - +1.7 427,443 - +0.7 427,456 + +0.6 427,456 + +0.5 427,456 + -0.6 427,456 + +0.7 427,456 + -0.5 427,456 + -1.0 427,456 + -0.5 427,456 + -0.3 427,456 + +0.3 427,456 + +0.1 427,456 + +0.2 427,457 - +0.9 427,457 - +0.6 427,457 - -0.3 427,457 - +0.8 427,457 - -1.1 427,457 - +1.5 427,457 - +0.2 427,457 - -0.0 427,457 - +1.1 427,462 + +0.5 427,463 - -1.7 427,463 - +0.1 427,488 + +0.7 427,502 + +0.5 427,502 + -0.1 427,520 + -0.5 427,556 - -0.1
Or see this region's nucleotide sequence