Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01255

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01250 and AO356_01255 are separated by 193 nucleotidesAO356_01255 and AO356_01260 are separated by 502 nucleotides AO356_01250: AO356_01250 - alpha-amylase, at 288,068 to 291,412 _01250 AO356_01255: AO356_01255 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 291,606 to 293,603 _01255 AO356_01260: AO356_01260 - methyltransferase, at 294,106 to 294,612 _01260 Position (kb) 291 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 290.619 kb on + strand, within AO356_01250at 290.619 kb on + strand, within AO356_01250at 290.619 kb on + strand, within AO356_01250at 290.620 kb on - strand, within AO356_01250at 290.620 kb on - strand, within AO356_01250at 290.677 kb on - strand, within AO356_01250at 290.677 kb on - strand, within AO356_01250at 290.901 kb on + strand, within AO356_01250at 290.902 kb on - strand, within AO356_01250at 290.902 kb on - strand, within AO356_01250at 290.973 kb on + strand, within AO356_01250at 290.974 kb on - strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.178 kb on - strandat 291.219 kb on + strandat 291.219 kb on + strandat 291.220 kb on - strandat 291.324 kb on + strandat 291.426 kb on + strandat 291.426 kb on + strandat 291.427 kb on - strandat 291.427 kb on - strandat 291.434 kb on + strandat 291.434 kb on + strandat 291.435 kb on - strandat 291.671 kb on - strandat 291.878 kb on - strand, within AO356_01255at 291.899 kb on + strand, within AO356_01255at 291.994 kb on + strand, within AO356_01255at 291.995 kb on - strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.064 kb on - strand, within AO356_01255at 292.225 kb on + strand, within AO356_01255at 292.226 kb on - strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.428 kb on + strand, within AO356_01255at 292.429 kb on - strand, within AO356_01255at 292.534 kb on + strand, within AO356_01255at 292.762 kb on + strand, within AO356_01255at 292.762 kb on + strand, within AO356_01255at 292.852 kb on + strand, within AO356_01255at 292.852 kb on + strand, within AO356_01255at 292.852 kb on + strand, within AO356_01255at 292.852 kb on + strand, within AO356_01255at 292.852 kb on + strand, within AO356_01255at 292.853 kb on - strand, within AO356_01255at 292.960 kb on + strand, within AO356_01255at 292.960 kb on + strand, within AO356_01255at 293.006 kb on - strand, within AO356_01255at 293.026 kb on + strand, within AO356_01255at 293.027 kb on - strand, within AO356_01255at 293.296 kb on + strand, within AO356_01255at 293.296 kb on + strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.442 kb on - strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.573 kb on - strandat 293.573 kb on - strandat 293.573 kb on - strandat 293.621 kb on - strandat 293.680 kb on + strandat 293.681 kb on - strandat 293.733 kb on + strandat 293.733 kb on + strandat 293.772 kb on + strandat 293.772 kb on + strandat 293.772 kb on + strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.819 kb on + strandat 293.819 kb on + strandat 293.820 kb on - strandat 293.820 kb on - strandat 294.035 kb on + strandat 294.035 kb on + strandat 294.036 kb on - strandat 294.036 kb on - strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.157 kb on + strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.406 kb on + strand, within AO356_01260

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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290,619 + AO356_01250 0.76 -0.6
290,619 + AO356_01250 0.76 +1.0
290,619 + AO356_01250 0.76 -0.1
290,620 - AO356_01250 0.76 -0.0
290,620 - AO356_01250 0.76 +1.4
290,677 - AO356_01250 0.78 +0.2
290,677 - AO356_01250 0.78 +0.5
290,901 + AO356_01250 0.85 -0.7
290,902 - AO356_01250 0.85 -0.1
290,902 - AO356_01250 0.85 -0.3
290,973 + AO356_01250 0.87 -1.4
290,974 - AO356_01250 0.87 +0.4
290,977 + AO356_01250 0.87 +0.0
290,977 + AO356_01250 0.87 +0.9
290,977 + AO356_01250 0.87 -0.8
290,977 + AO356_01250 0.87 -1.6
290,977 + AO356_01250 0.87 -1.0
290,977 + AO356_01250 0.87 -0.1
290,977 + AO356_01250 0.87 -1.0
290,978 - AO356_01250 0.87 -0.7
290,978 - AO356_01250 0.87 -0.7
290,978 - AO356_01250 0.87 -1.6
290,978 - AO356_01250 0.87 -1.3
291,000 + AO356_01250 0.88 +0.5
291,000 + AO356_01250 0.88 +0.3
291,000 + AO356_01250 0.88 -0.3
291,000 + AO356_01250 0.88 -0.7
291,000 + AO356_01250 0.88 +0.7
291,000 + AO356_01250 0.88 +0.9
291,000 + AO356_01250 0.88 +0.2
291,001 - AO356_01250 0.88 +0.7
291,001 - AO356_01250 0.88 +0.1
291,001 - AO356_01250 0.88 -0.1
291,001 - AO356_01250 0.88 -0.0
291,001 - AO356_01250 0.88 -0.3
291,178 - -1.1
291,219 + +1.4
291,219 + +0.4
291,220 - -0.1
291,324 + -0.6
291,426 + +0.7
291,426 + -0.4
291,427 - -1.7
291,427 - -0.1
291,434 + +0.1
291,434 + +0.4
291,435 - -0.1
291,671 - -2.1
291,878 - AO356_01255 0.14 -1.1
291,899 + AO356_01255 0.15 +0.2
291,994 + AO356_01255 0.19 -0.1
291,995 - AO356_01255 0.19 -3.6
292,063 + AO356_01255 0.23 -1.3
292,063 + AO356_01255 0.23 -1.3
292,063 + AO356_01255 0.23 -1.1
292,064 - AO356_01255 0.23 -1.1
292,225 + AO356_01255 0.31 -0.1
292,226 - AO356_01255 0.31 -0.7
292,264 + AO356_01255 0.33 -2.1
292,264 + AO356_01255 0.33 -1.1
292,264 + AO356_01255 0.33 -0.1
292,264 + AO356_01255 0.33 -2.1
292,264 + AO356_01255 0.33 +0.6
292,264 + AO356_01255 0.33 +0.7
292,264 + AO356_01255 0.33 -0.1
292,265 - AO356_01255 0.33 -0.6
292,265 - AO356_01255 0.33 +0.3
292,265 - AO356_01255 0.33 -0.7
292,268 + AO356_01255 0.33 -1.3
292,268 + AO356_01255 0.33 +0.1
292,268 + AO356_01255 0.33 -0.8
292,269 - AO356_01255 0.33 -1.6
292,269 - AO356_01255 0.33 -1.5
292,269 - AO356_01255 0.33 -2.5
292,269 - AO356_01255 0.33 -1.5
292,270 + AO356_01255 0.33 -1.0
292,270 + AO356_01255 0.33 -1.1
292,270 + AO356_01255 0.33 -1.1
292,270 + AO356_01255 0.33 +0.3
292,271 - AO356_01255 0.33 +0.1
292,271 - AO356_01255 0.33 -2.5
292,271 - AO356_01255 0.33 -0.1
292,271 - AO356_01255 0.33 -1.1
292,271 - AO356_01255 0.33 -0.7
292,271 - AO356_01255 0.33 -0.9
292,271 - AO356_01255 0.33 -0.4
292,271 - AO356_01255 0.33 +0.3
292,271 - AO356_01255 0.33 -0.4
292,428 + AO356_01255 0.41 -0.1
292,429 - AO356_01255 0.41 +0.4
292,534 + AO356_01255 0.46 -1.6
292,762 + AO356_01255 0.58 +2.7
292,762 + AO356_01255 0.58 -0.9
292,852 + AO356_01255 0.62 +0.1
292,852 + AO356_01255 0.62 +0.1
292,852 + AO356_01255 0.62 -0.6
292,852 + AO356_01255 0.62 -1.5
292,852 + AO356_01255 0.62 -1.7
292,853 - AO356_01255 0.62 +0.9
292,960 + AO356_01255 0.68 -0.6
292,960 + AO356_01255 0.68 -1.4
293,006 - AO356_01255 0.70 -0.5
293,026 + AO356_01255 0.71 +0.4
293,027 - AO356_01255 0.71 -1.7
293,296 + AO356_01255 0.85 -0.3
293,296 + AO356_01255 0.85 -0.1
293,297 - AO356_01255 0.85 -1.1
293,297 - AO356_01255 0.85 +0.3
293,297 - AO356_01255 0.85 +0.1
293,442 - -0.9
293,572 + +0.9
293,572 + -1.1
293,572 + -0.1
293,572 + -0.7
293,573 - +0.2
293,573 - -0.6
293,573 - +0.9
293,621 - -0.1
293,680 + -0.7
293,681 - +0.4
293,733 + -0.8
293,733 + +0.5
293,772 + +1.9
293,772 + -0.6
293,772 + +0.3
293,773 - +0.3
293,773 - -0.1
293,773 - +1.1
293,773 - +0.4
293,819 + +1.3
293,819 + -0.4
293,820 - +0.0
293,820 - -0.6
294,035 + -0.7
294,035 + -0.0
294,036 - +0.3
294,036 - +3.6
294,101 + -0.1
294,101 + +0.7
294,101 + +0.1
294,101 + +0.4
294,101 + -0.9
294,101 + +0.5
294,101 + -0.1
294,101 + +1.2
294,101 + +0.0
294,102 - -1.1
294,102 - -0.7
294,102 - +0.9
294,102 - -0.9
294,102 - +0.3
294,157 + AO356_01260 0.10 -0.2
294,158 - AO356_01260 0.10 -0.9
294,158 - AO356_01260 0.10 +0.0
294,158 - AO356_01260 0.10 -0.3
294,187 - AO356_01260 0.16 -1.5
294,187 - AO356_01260 0.16 +0.4
294,187 - AO356_01260 0.16 -0.0
294,187 - AO356_01260 0.16 +0.4
294,187 - AO356_01260 0.16 -3.1
294,187 - AO356_01260 0.16 -1.0
294,187 - AO356_01260 0.16 -0.1
294,355 + AO356_01260 0.49 -0.7
294,355 + AO356_01260 0.49 -0.1
294,355 + AO356_01260 0.49 +0.4
294,356 - AO356_01260 0.49 +0.6
294,356 - AO356_01260 0.49 +1.7
294,356 - AO356_01260 0.49 +0.7
294,406 + AO356_01260 0.59 +0.3

Or see this region's nucleotide sequence