Strain Fitness in Shewanella oneidensis MR-1 around SOA0121

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0120 and SOA0121 overlap by 25 nucleotidesSOA0121 and SOA0122 are separated by 194 nucleotidesSOA0122 and SOA0123 are separated by 223 nucleotides SOA0120: SOA0120 - ISSod12, transposase (NCBI ptt file), at 107,889 to 108,812 SOA0120 SOA0121: SOA0121 - hypothetical protein (NCBI ptt file), at 108,788 to 108,913 SOA0121 SOA0122: SOA0122 - conserved hypothetical protein (NCBI ptt file), at 109,108 to 109,497 SOA0122 SOA0123: SOA0123 - conserved domain protein (NCBI ptt file), at 109,721 to 109,930 SOA0123 Position (kb) 108 109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 107.869 kb on - strandat 108.861 kb on + strand, within SOA0121at 108.888 kb on + strand, within SOA0121at 109.025 kb on + strandat 109.027 kb on + strandat 109.028 kb on + strandat 109.028 kb on + strandat 109.036 kb on - strandat 109.036 kb on - strandat 109.052 kb on - strandat 109.059 kb on - strandat 109.146 kb on + strandat 109.146 kb on + strandat 109.146 kb on + strandat 109.146 kb on + strandat 109.149 kb on - strand, within SOA0122at 109.151 kb on + strand, within SOA0122at 109.154 kb on + strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.154 kb on - strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.156 kb on + strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.163 kb on - strand, within SOA0122at 109.164 kb on - strand, within SOA0122at 109.164 kb on - strand, within SOA0122at 109.165 kb on - strand, within SOA0122at 109.174 kb on + strandat 109.190 kb on - strand, within SOA0122at 109.197 kb on + strand, within SOA0122at 109.197 kb on + strand, within SOA0122at 109.198 kb on + strand, within SOA0122at 109.204 kb on + strand, within SOA0122at 109.204 kb on + strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.205 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.207 kb on - strand, within SOA0122at 109.223 kb on + strand, within SOA0122at 109.223 kb on + strand, within SOA0122at 109.223 kb on + strand, within SOA0122at 109.223 kb on + strand, within SOA0122at 109.223 kb on + strand, within SOA0122at 109.230 kb on - strand, within SOA0122at 109.231 kb on - strand, within SOA0122at 109.231 kb on - strand, within SOA0122at 109.237 kb on + strand, within SOA0122at 109.239 kb on + strand, within SOA0122at 109.245 kb on - strand, within SOA0122at 109.250 kb on + strand, within SOA0122at 109.252 kb on + strand, within SOA0122at 109.252 kb on + strand, within SOA0122at 109.257 kb on - strand, within SOA0122at 109.258 kb on + strand, within SOA0122at 109.258 kb on + strand, within SOA0122at 109.258 kb on - strand, within SOA0122at 109.258 kb on - strand, within SOA0122at 109.260 kb on - strand, within SOA0122at 109.260 kb on - strand, within SOA0122at 109.267 kb on + strand, within SOA0122at 109.268 kb on + strand, within SOA0122at 109.268 kb on + strand, within SOA0122at 109.274 kb on - strand, within SOA0122at 109.276 kb on - strand, within SOA0122at 109.276 kb on - strand, within SOA0122at 109.281 kb on + strand, within SOA0122at 109.281 kb on + strand, within SOA0122at 109.289 kb on - strand, within SOA0122at 109.289 kb on - strand, within SOA0122at 109.291 kb on - strand, within SOA0122at 109.300 kb on + strand, within SOA0122at 109.309 kb on - strand, within SOA0122at 109.309 kb on - strand, within SOA0122at 109.347 kb on + strand, within SOA0122at 109.354 kb on + strand, within SOA0122at 109.354 kb on + strand, within SOA0122at 109.362 kb on - strand, within SOA0122at 109.365 kb on + strand, within SOA0122at 109.366 kb on - strand, within SOA0122at 109.373 kb on - strand, within SOA0122at 109.373 kb on - strand, within SOA0122at 109.373 kb on - strand, within SOA0122at 109.373 kb on - strand, within SOA0122at 109.373 kb on - strand, within SOA0122at 109.394 kb on + strand, within SOA0122at 109.394 kb on + strand, within SOA0122at 109.394 kb on + strand, within SOA0122at 109.400 kb on + strand, within SOA0122at 109.400 kb on + strand, within SOA0122at 109.400 kb on + strand, within SOA0122at 109.400 kb on - strand, within SOA0122at 109.400 kb on - strand, within SOA0122at 109.400 kb on - strand, within SOA0122at 109.400 kb on - strand, within SOA0122at 109.402 kb on - strand, within SOA0122at 109.402 kb on - strand, within SOA0122at 109.406 kb on + strand, within SOA0122at 109.408 kb on - strand, within SOA0122at 109.408 kb on - strand, within SOA0122at 109.408 kb on - strand, within SOA0122at 109.412 kb on + strand, within SOA0122at 109.412 kb on + strand, within SOA0122at 109.419 kb on + strand, within SOA0122at 109.419 kb on + strand, within SOA0122at 109.420 kb on - strand, within SOA0122at 109.427 kb on - strand, within SOA0122at 109.427 kb on - strand, within SOA0122at 109.451 kb on + strand, within SOA0122at 109.451 kb on + strand, within SOA0122at 109.451 kb on + strand, within SOA0122at 109.451 kb on + strand, within SOA0122at 109.454 kb on - strand, within SOA0122at 109.459 kb on - strandat 109.459 kb on - strandat 109.459 kb on - strandat 109.568 kb on + strandat 109.568 kb on + strandat 109.568 kb on + strandat 109.571 kb on + strandat 109.571 kb on + strandat 109.576 kb on - strandat 109.576 kb on - strandat 109.576 kb on - strandat 109.576 kb on - strandat 109.576 kb on - strandat 109.576 kb on - strandat 109.578 kb on + strandat 109.578 kb on + strandat 109.578 kb on + strandat 109.584 kb on + strandat 109.586 kb on - strandat 109.593 kb on + strandat 109.593 kb on + strandat 109.593 kb on + strandat 109.601 kb on - strandat 109.601 kb on - strandat 109.601 kb on - strandat 109.601 kb on - strandat 109.601 kb on - strandat 109.601 kb on - strandat 109.609 kb on + strandat 109.618 kb on + strandat 109.620 kb on + strandat 109.620 kb on + strandat 109.620 kb on + strandat 109.620 kb on + strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.628 kb on - strandat 109.635 kb on + strandat 109.643 kb on - strandat 109.687 kb on - strandat 109.691 kb on + strandat 109.691 kb on + strandat 109.691 kb on + strandat 109.694 kb on - strandat 109.699 kb on - strandat 109.699 kb on - strandat 109.699 kb on - strandat 109.714 kb on + strandat 109.726 kb on + strandat 109.726 kb on + strandat 109.732 kb on - strandat 109.734 kb on - strandat 109.757 kb on + strand, within SOA0123at 109.765 kb on - strand, within SOA0123at 109.836 kb on - strand, within SOA0123at 109.840 kb on + strand, within SOA0123at 109.846 kb on + strand, within SOA0123at 109.846 kb on + strand, within SOA0123at 109.848 kb on - strand, within SOA0123at 109.848 kb on - strand, within SOA0123at 109.854 kb on - strand, within SOA0123

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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107,869 - +0.2
108,861 + SOA0121 0.58 -1.2
108,888 + SOA0121 0.79 -0.6
109,025 + -1.7
109,027 + -0.1
109,028 + -1.0
109,028 + +0.4
109,036 - -0.0
109,036 - -0.5
109,052 - -0.9
109,059 - -0.3
109,146 + +0.5
109,146 + +0.9
109,146 + -0.1
109,146 + -0.3
109,149 - SOA0122 0.11 -0.2
109,151 + SOA0122 0.11 +2.0
109,154 + SOA0122 0.12 +0.5
109,154 - SOA0122 0.12 +0.8
109,154 - SOA0122 0.12 +0.2
109,154 - SOA0122 0.12 +3.2
109,154 - SOA0122 0.12 -0.4
109,154 - SOA0122 0.12 -1.1
109,154 - SOA0122 0.12 +0.2
109,154 - SOA0122 0.12 +0.0
109,154 - SOA0122 0.12 -0.2
109,156 + SOA0122 0.12 +0.5
109,156 + SOA0122 0.12 -0.2
109,156 + SOA0122 0.12 +1.0
109,156 + SOA0122 0.12 -0.2
109,156 + SOA0122 0.12 +0.2
109,156 + SOA0122 0.12 +0.4
109,156 + SOA0122 0.12 -0.2
109,156 + SOA0122 0.12 -0.8
109,156 + SOA0122 0.12 -0.1
109,156 + SOA0122 0.12 +0.1
109,163 - SOA0122 0.14 -0.2
109,163 - SOA0122 0.14 -1.3
109,163 - SOA0122 0.14 -0.7
109,163 - SOA0122 0.14 +0.6
109,163 - SOA0122 0.14 -0.5
109,163 - SOA0122 0.14 +0.5
109,163 - SOA0122 0.14 -1.2
109,163 - SOA0122 0.14 +0.7
109,163 - SOA0122 0.14 +0.3
109,163 - SOA0122 0.14 -1.4
109,164 - SOA0122 0.14 -1.6
109,164 - SOA0122 0.14 -0.7
109,165 - SOA0122 0.15 -0.4
109,174 + -2.0
109,190 - SOA0122 0.21 +0.6
109,197 + SOA0122 0.23 +0.1
109,197 + SOA0122 0.23 +0.8
109,198 + SOA0122 0.23 +0.4
109,204 + SOA0122 0.25 +0.1
109,204 + SOA0122 0.25 +0.4
109,205 - SOA0122 0.25 -0.0
109,205 - SOA0122 0.25 -0.6
109,205 - SOA0122 0.25 -0.8
109,205 - SOA0122 0.25 -0.3
109,205 - SOA0122 0.25 -0.7
109,205 - SOA0122 0.25 -0.4
109,205 - SOA0122 0.25 +0.2
109,205 - SOA0122 0.25 +1.0
109,207 - SOA0122 0.25 -0.5
109,207 - SOA0122 0.25 -0.4
109,207 - SOA0122 0.25 +1.4
109,207 - SOA0122 0.25 +0.1
109,207 - SOA0122 0.25 +0.2
109,207 - SOA0122 0.25 -0.7
109,223 + SOA0122 0.29 -0.5
109,223 + SOA0122 0.29 +0.2
109,223 + SOA0122 0.29 +0.8
109,223 + SOA0122 0.29 -0.5
109,223 + SOA0122 0.29 +1.8
109,230 - SOA0122 0.31 -0.6
109,231 - SOA0122 0.32 +0.4
109,231 - SOA0122 0.32 +0.3
109,237 + SOA0122 0.33 +0.4
109,239 + SOA0122 0.34 +0.2
109,245 - SOA0122 0.35 +0.1
109,250 + SOA0122 0.36 -1.0
109,252 + SOA0122 0.37 +0.1
109,252 + SOA0122 0.37 -0.2
109,257 - SOA0122 0.38 +0.7
109,258 + SOA0122 0.38 +0.3
109,258 + SOA0122 0.38 +0.2
109,258 - SOA0122 0.38 -0.5
109,258 - SOA0122 0.38 +0.6
109,260 - SOA0122 0.39 -0.7
109,260 - SOA0122 0.39 -0.5
109,267 + SOA0122 0.41 +0.1
109,268 + SOA0122 0.41 +1.1
109,268 + SOA0122 0.41 +0.0
109,274 - SOA0122 0.43 +0.2
109,276 - SOA0122 0.43 +0.2
109,276 - SOA0122 0.43 -1.9
109,281 + SOA0122 0.44 +0.4
109,281 + SOA0122 0.44 +0.5
109,289 - SOA0122 0.46 -0.8
109,289 - SOA0122 0.46 -0.5
109,291 - SOA0122 0.47 -1.1
109,300 + SOA0122 0.49 -0.5
109,309 - SOA0122 0.52 -1.1
109,309 - SOA0122 0.52 +0.1
109,347 + SOA0122 0.61 +1.2
109,354 + SOA0122 0.63 +0.6
109,354 + SOA0122 0.63 -0.5
109,362 - SOA0122 0.65 +1.4
109,365 + SOA0122 0.66 +0.6
109,366 - SOA0122 0.66 -0.3
109,373 - SOA0122 0.68 -0.6
109,373 - SOA0122 0.68 +0.8
109,373 - SOA0122 0.68 +0.2
109,373 - SOA0122 0.68 +0.2
109,373 - SOA0122 0.68 +0.4
109,394 + SOA0122 0.73 -0.1
109,394 + SOA0122 0.73 +0.3
109,394 + SOA0122 0.73 -0.2
109,400 + SOA0122 0.75 -0.7
109,400 + SOA0122 0.75 -0.7
109,400 + SOA0122 0.75 +1.0
109,400 - SOA0122 0.75 +0.1
109,400 - SOA0122 0.75 -0.3
109,400 - SOA0122 0.75 -1.6
109,400 - SOA0122 0.75 +0.8
109,402 - SOA0122 0.75 -0.4
109,402 - SOA0122 0.75 +0.7
109,406 + SOA0122 0.76 +3.5
109,408 - SOA0122 0.77 -0.4
109,408 - SOA0122 0.77 -1.2
109,408 - SOA0122 0.77 -0.1
109,412 + SOA0122 0.78 -1.0
109,412 + SOA0122 0.78 +0.9
109,419 + SOA0122 0.80 +0.1
109,419 + SOA0122 0.80 +0.7
109,420 - SOA0122 0.80 -0.1
109,427 - SOA0122 0.82 -0.6
109,427 - SOA0122 0.82 +0.3
109,451 + SOA0122 0.88 +0.9
109,451 + SOA0122 0.88 +0.2
109,451 + SOA0122 0.88 -0.0
109,451 + SOA0122 0.88 +1.4
109,454 - SOA0122 0.89 -0.6
109,459 - +0.4
109,459 - +0.0
109,459 - +0.2
109,568 + +0.6
109,568 + +0.3
109,568 + +1.2
109,571 + -1.3
109,571 + +0.8
109,576 - -0.6
109,576 - +0.7
109,576 - +0.1
109,576 - -0.3
109,576 - -0.0
109,576 - -0.7
109,578 + -0.1
109,578 + +0.2
109,578 + +2.5
109,584 + +0.1
109,586 - +0.2
109,593 + -0.4
109,593 + +0.4
109,593 + -0.0
109,601 - +0.3
109,601 - -0.1
109,601 - +0.0
109,601 - -0.2
109,601 - -0.9
109,601 - +0.8
109,609 + -0.4
109,618 + +1.6
109,620 + -1.6
109,620 + -0.6
109,620 + +1.1
109,620 + +0.6
109,628 - -0.9
109,628 - -0.4
109,628 - -0.3
109,628 - +0.7
109,628 - +0.4
109,628 - -1.0
109,628 - +0.1
109,628 - -0.3
109,628 - -0.0
109,635 + +0.7
109,643 - +0.4
109,687 - -0.3
109,691 + +1.3
109,691 + +0.9
109,691 + +0.5
109,694 - -0.2
109,699 - -0.8
109,699 - +0.3
109,699 - +0.6
109,714 + +0.3
109,726 + +0.7
109,726 + +0.8
109,732 - +1.4
109,734 - +0.3
109,757 + SOA0123 0.17 +0.2
109,765 - SOA0123 0.21 +1.0
109,836 - SOA0123 0.55 +0.1
109,840 + SOA0123 0.57 +0.5
109,846 + SOA0123 0.60 +0.2
109,846 + SOA0123 0.60 +0.7
109,848 - SOA0123 0.60 +0.1
109,848 - SOA0123 0.60 -0.1
109,854 - SOA0123 0.63 +0.6

Or see this region's nucleotide sequence