Strain Fitness in Shewanella oneidensis MR-1 around SO1480

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
1,541,178	+				-0.1
1,541,230	+		SO1478	0.13	+0.1
1,541,250	+		SO1478	0.16	-0.1
1,541,337	-		SO1478	0.27	+0.4
1,541,486	+		SO1478	0.47	-0.2
1,541,631	+		SO1478	0.65	-0.1
1,541,687	+		SO1478	0.72	+0.0
1,541,695	-		SO1478	0.74	+0.0
1,541,699	+		SO1478	0.74	-0.2
1,541,699	+		SO1478	0.74	-0.8
1,541,706	+		SO1478	0.75	-0.1
1,541,706	+		SO1478	0.75	-0.1
1,541,706	+		SO1478	0.75	+0.1
1,541,706	+		SO1478	0.75	-0.5
1,541,706	+		SO1478	0.75	-0.8
1,541,706	+		SO1478	0.75	-0.2
1,541,706	+		SO1478	0.75	+0.0
1,541,714	-		SO1478	0.76	+0.6
1,541,714	-		SO1478	0.76	-0.5
1,541,714	-		SO1478	0.76	+0.7
1,541,714	-		SO1478	0.76	-1.6
1,541,714	-		SO1478	0.76	-0.7
1,541,714	-		SO1478	0.76	-1.0
1,541,714	-		SO1478	0.76	+0.1
1,541,714	-		SO1478	0.76	-0.6
1,541,765	+		SO1478	0.83	+0.6
1,541,772	-		SO1478	0.83	-2.3
1,541,832	+				-0.5
1,541,843	+				-0.2
1,541,851	-				+1.0
1,541,851	-				-0.7
1,541,851	-				-0.1
1,541,851	-				+0.3
1,541,869	+				+0.2
1,541,876	-				-0.2
1,541,877	-				+0.0
1,541,877	-				+0.4
1,541,953	-				-0.4
1,541,991	+		SO1479	0.22	-0.5
1,541,991	+		SO1479	0.22	-0.4
1,541,999	-		SO1479	0.25	+0.1
1,541,999	-		SO1479	0.25	-0.2
1,542,002	+		SO1479	0.27	+0.5
1,542,009	+		SO1479	0.30	+0.3
1,542,010	-		SO1479	0.31	-0.8
1,542,010	-		SO1479	0.31	+1.5
1,542,010	-		SO1479	0.31	-0.9
1,542,010	-		SO1479	0.31	-0.4
1,542,014	+		SO1479	0.32	+0.1
1,542,039	+		SO1479	0.44	-0.3
1,542,040	+		SO1479	0.44	-0.1
1,542,041	+		SO1479	0.45	+0.1
1,542,047	-		SO1479	0.48	+0.1
1,542,057	+		SO1479	0.52	-1.8
1,542,057	+		SO1479	0.52	+0.1
1,542,057	+		SO1479	0.52	-0.3
1,542,065	-		SO1479	0.56	+0.6
1,542,080	-		SO1479	0.63	-0.1
1,542,106	+		SO1479	0.75	-0.3
1,542,116	+		SO1479	0.80	+0.2
1,542,117	+		SO1479	0.80	+0.1
1,542,125	-		SO1479	0.84	-0.3
1,542,144	+				+0.3
1,542,144	+				-0.4
1,542,152	-				+0.2
1,542,152	-				-1.8
1,542,152	-				-0.0
1,542,152	-				-0.0
1,542,198	-				+0.3
1,542,211	+				-0.6
1,542,211	+				-0.1
1,542,219	-				-0.1
1,542,219	-				-0.2
1,542,233	+				+0.3
1,542,263	+				-0.0
1,542,263	+				-0.3
1,542,263	-				+0.2
1,542,263	-				-0.4
1,542,263	-				-3.0
1,542,271	-				-0.0
1,542,271	-				-0.9
1,542,289	+				-0.7
1,542,338	+				-1.3
1,542,346	-		SO1480	0.10	-0.7
1,542,353	-		SO1480	0.11	+0.8
1,542,355	+		SO1480	0.11	-0.1
1,542,355	-		SO1480	0.11	-1.1
1,542,363	+		SO1480	0.11	-0.3
1,542,363	+		SO1480	0.11	-1.2
1,542,363	+		SO1480	0.11	+0.2
1,542,376	+		SO1480	0.12	+0.2
1,542,384	-		SO1480	0.13	+0.1
1,542,384	-		SO1480	0.13	-0.7
1,542,384	-		SO1480	0.13	+0.2
1,542,391	+		SO1480	0.13	-0.0
1,542,391	+		SO1480	0.13	-0.4
1,542,399	-		SO1480	0.13	-0.0
1,542,399	-		SO1480	0.13	-0.1
1,542,399	-		SO1480	0.13	+0.2
1,542,399	-		SO1480	0.13	-0.4
1,542,414	-		SO1480	0.14	-0.0
1,542,414	-		SO1480	0.14	-0.8
1,542,414	-		SO1480	0.14	-0.2
1,542,420	-		SO1480	0.15	+0.2
1,542,420	-		SO1480	0.15	+0.5
1,542,427	+		SO1480	0.15	+0.4
1,542,427	+		SO1480	0.15	+0.5
1,542,434	-		SO1480	0.15	-1.0
1,542,435	-		SO1480	0.15	+0.2
1,542,435	-		SO1480	0.15	+0.2
1,542,435	-		SO1480	0.15	-1.8
1,542,435	-		SO1480	0.15	-0.2
1,542,441	-		SO1480	0.16	-0.9
1,542,441	-		SO1480	0.16	+1.0
1,542,473	+		SO1480	0.17	+1.5
1,542,473	+		SO1480	0.17	+0.1
1,542,473	+		SO1480	0.17	+0.3
1,542,473	+		SO1480	0.17	-0.0
1,542,481	-		SO1480	0.18	-0.1
1,542,481	-		SO1480	0.18	+0.6
1,542,485	+		SO1480	0.18	-0.2
1,542,487	+		SO1480	0.18	-1.0
1,542,496	+		SO1480	0.19	-1.2
1,542,539	+		SO1480	0.21	-0.0
1,542,539	+		SO1480	0.21	+0.2
1,542,539	+		SO1480	0.21	+0.9
1,542,539	+		SO1480	0.21	+0.3
1,542,547	-		SO1480	0.22	+0.1
1,542,547	-		SO1480	0.22	-0.3
1,542,547	-		SO1480	0.22	+0.8
1,542,547	-		SO1480	0.22	-0.6
1,542,547	-		SO1480	0.22	+0.4
1,542,557	-		SO1480	0.22	+0.1
1,542,566	+		SO1480	0.23	+0.3
1,542,581	-		SO1480	0.24	+0.9
1,542,581	-		SO1480	0.24	-0.4
1,542,603	-		SO1480	0.25	+0.6
1,542,617	-		SO1480	0.26	-2.1
1,542,624	-		SO1480	0.26	-0.4
1,542,624	-		SO1480	0.26	-0.1
1,542,626	+		SO1480	0.26	+0.1
1,542,626	+		SO1480	0.26	-0.3
1,542,627	-		SO1480	0.26	-0.4
1,542,659	+		SO1480	0.28	+0.0
1,542,707	+		SO1480	0.31	-0.4
1,542,707	+		SO1480	0.31	+0.6
1,542,709	-		SO1480	0.31	-0.6
1,542,710	-		SO1480	0.31	-2.1
1,542,715	-		SO1480	0.31	-1.2
1,542,737	-		SO1480	0.32	-0.6
1,542,775	+		SO1480	0.34	+1.0
1,542,788	-		SO1480	0.35	-0.4
1,542,795	-		SO1480	0.35	-0.9
1,542,800	-		SO1480	0.36	-0.5
1,542,805	-		SO1480	0.36	-1.4
1,542,839	-		SO1480	0.38	-0.6
1,542,839	-		SO1480	0.38	+0.4
1,542,863	+		SO1480	0.39	-0.4
1,542,863	+		SO1480	0.39	+0.6
1,542,866	-		SO1480	0.39	+0.5
1,542,871	-		SO1480	0.40	-1.0
1,542,871	-		SO1480	0.40	-0.5
1,542,871	-		SO1480	0.40	-0.7
1,542,896	+		SO1480	0.41	+0.2
1,542,904	+		SO1480	0.42	-0.0
1,542,905	+		SO1480	0.42	+0.0
1,542,933	+		SO1480	0.43	+0.1
1,542,933	+		SO1480	0.43	-0.5
1,542,933	+		SO1480	0.43	+1.5
1,542,941	-		SO1480	0.44	-0.5
1,542,941	-		SO1480	0.44	-1.2
1,542,949	+		SO1480	0.44	+0.9
1,542,949	+		SO1480	0.44	+0.4
1,542,951	-		SO1480	0.44	-0.8
1,542,954	+		SO1480	0.44	-1.5
1,543,015	+		SO1480	0.48	-0.5
1,543,042	-		SO1480	0.49	+0.2
1,543,043	+		SO1480	0.49	+0.1
1,543,043	+		SO1480	0.49	-0.2
1,543,043	+		SO1480	0.49	-0.3
1,543,043	+		SO1480	0.49	-1.0
1,543,051	-		SO1480	0.50	+0.0
1,543,069	+		SO1480	0.51	-0.1
1,543,069	+		SO1480	0.51	-1.1
1,543,069	+		SO1480	0.51	-0.2
1,543,069	+		SO1480	0.51	-1.0
1,543,077	-		SO1480	0.51	-1.1
1,543,077	-		SO1480	0.51	+0.1
1,543,077	-		SO1480	0.51	+0.1
1,543,083	+		SO1480	0.52	+0.1
1,543,091	-		SO1480	0.52	-0.1
1,543,108	+		SO1480	0.53	+0.2
1,543,111	-		SO1480	0.53	-0.4
1,543,113	+		SO1480	0.53	+0.1
1,543,121	-		SO1480	0.54	-0.1
1,543,133	-		SO1480	0.54	-0.2
1,543,142	+		SO1480	0.55	+0.3
1,543,203	+		SO1480	0.58	-0.3
1,543,219	-		SO1480	0.59	-0.4
1,543,249	-		SO1480	0.61	+0.1
1,543,277	+		SO1480	0.62	-0.8
1,543,285	-		SO1480	0.63	+0.0
1,543,285	-		SO1480	0.63	-1.1
1,543,295	+		SO1480	0.63	-0.3
1,543,323	+		SO1480	0.65	+0.3
1,543,424	+		SO1480	0.71	+0.8
1,543,424	+		SO1480	0.71	+0.6
1,543,431	+		SO1480	0.71	+0.6
1,543,433	-		SO1480	0.71	-0.1
1,543,441	+		SO1480	0.72	-0.6
1,543,441	+		SO1480	0.72	+0.8
1,543,561	+		SO1480	0.78	+0.5
1,543,572	-		SO1480	0.79	-0.1
1,543,593	+		SO1480	0.80	+1.3
1,543,730	+		SO1480	0.88	+0.8
1,543,730	+		SO1480	0.88	-0.1
1,543,777	-				+0.1
1,543,816	+				+0.6
1,543,824	-				+1.2
1,543,834	-				+0.3
1,543,839	+				-0.1
1,543,861	+				-1.2
1,543,869	-				+0.1
1,543,899	-				-0.4
1,543,944	+				+1.0
1,544,167	+				+0.7
1,544,167	+				-1.0
1,544,175	-				+0.3
1,544,185	-				-0.1
1,544,190	-				-0.2
1,544,190	-				+1.4
1,544,190	-				-0.3
1,544,190	-				+0.4
1,544,190	-				+0.7
1,544,255	-				-0.2
1,544,255	-				+0.3
1,544,258	+				-0.1
1,544,258	+				+1.9
1,544,295	-				+0.0
1,544,380	+		SO1481	0.12	+0.1
1,544,388	-		SO1481	0.13	-0.4
1,544,482	+		SO1481	0.18	-0.3
1,544,649	-		SO1481	0.28	-0.2
1,544,687	+		SO1481	0.30	-0.1
1,544,695	+		SO1481	0.30	-1.4
1,544,823	+		SO1481	0.37	+0.9
1,544,835	+		SO1481	0.38	-0.1
1,544,871	-		SO1481	0.40	-0.2
1,544,871	-		SO1481	0.40	+0.9
1,544,902	+		SO1481	0.42	-0.2
1,544,936	+		SO1481	0.44	+0.1