Experiment: BG11 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntC and mntA are separated by 58 nucleotides mntA and mntB are separated by 6 nucleotides mntB and Synpcc7942_1319 are separated by 65 nucleotides
Synpcc7942_1316: mntC - Mn transporter MntC, at 1,346,077 to 1,347,114
mntC
Synpcc7942_1317: mntA - ATPase, at 1,347,173 to 1,347,910
mntA
Synpcc7942_1318: mntB - manganese transport system membrane protein MntB, at 1,347,917 to 1,348,768
mntB
Synpcc7942_1319: Synpcc7942_1319 - pyrimidine regulatory protein PyrR, at 1,348,834 to 1,349,373
_1319
Position (kb) 1347
1348 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1346.193 kb on + strand, within mntC at 1346.218 kb on + strand, within mntC at 1346.218 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.221 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.235 kb on + strand, within mntC at 1346.288 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.312 kb on + strand, within mntC at 1346.313 kb on - strand, within mntC at 1346.349 kb on + strand, within mntC at 1346.352 kb on + strand, within mntC at 1346.358 kb on - strand, within mntC at 1346.358 kb on - strand, within mntC at 1346.359 kb on + strand at 1346.391 kb on + strand, within mntC at 1346.537 kb on + strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.560 kb on - strand, within mntC at 1346.568 kb on + strand at 1346.568 kb on + strand, within mntC at 1346.568 kb on + strand, within mntC at 1346.576 kb on - strand, within mntC at 1346.576 kb on - strand, within mntC at 1346.588 kb on - strand, within mntC at 1346.615 kb on + strand, within mntC at 1346.623 kb on - strand, within mntC at 1346.661 kb on + strand, within mntC at 1346.666 kb on + strand, within mntC at 1346.682 kb on + strand, within mntC at 1346.683 kb on + strand, within mntC at 1346.718 kb on + strand, within mntC at 1346.726 kb on - strand, within mntC at 1346.733 kb on - strand, within mntC at 1346.733 kb on - strand, within mntC at 1346.735 kb on + strand, within mntC at 1346.743 kb on - strand, within mntC at 1346.752 kb on + strand, within mntC at 1346.800 kb on + strand, within mntC at 1346.800 kb on + strand, within mntC at 1346.804 kb on - strand, within mntC at 1346.808 kb on - strand, within mntC at 1346.808 kb on - strand, within mntC at 1346.826 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.841 kb on - strand, within mntC at 1346.843 kb on + strand, within mntC at 1346.881 kb on + strand, within mntC at 1346.888 kb on + strand, within mntC at 1346.889 kb on + strand, within mntC at 1346.895 kb on + strand, within mntC at 1346.895 kb on + strand, within mntC at 1346.896 kb on + strand, within mntC at 1346.896 kb on - strand, within mntC at 1346.897 kb on - strand, within mntC at 1346.897 kb on - strand, within mntC at 1346.904 kb on - strand, within mntC at 1346.905 kb on - strand, within mntC at 1346.943 kb on - strand, within mntC at 1346.948 kb on - strand, within mntC at 1346.975 kb on + strand, within mntC at 1346.982 kb on + strand, within mntC at 1346.988 kb on - strand, within mntC at 1346.990 kb on + strand, within mntC at 1346.990 kb on + strand at 1346.998 kb on - strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.020 kb on - strand at 1347.020 kb on - strand at 1347.038 kb on + strand at 1347.044 kb on + strand at 1347.044 kb on - strand at 1347.062 kb on + strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.080 kb on + strand at 1347.091 kb on + strand at 1347.103 kb on - strand at 1347.117 kb on + strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.127 kb on + strand at 1347.190 kb on - strand at 1347.250 kb on - strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.277 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.322 kb on + strand, within mntA at 1347.344 kb on + strand, within mntA at 1347.354 kb on - strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.398 kb on - strand, within mntA at 1347.424 kb on - strand, within mntA at 1347.571 kb on + strand, within mntA at 1347.579 kb on - strand, within mntA at 1347.654 kb on - strand, within mntA at 1347.748 kb on + strand, within mntA at 1347.758 kb on + strand, within mntA at 1347.768 kb on + strand, within mntA at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.876 kb on - strand at 1347.882 kb on - strand at 1347.926 kb on - strand at 1347.949 kb on - strand at 1347.974 kb on - strand at 1348.055 kb on + strand, within mntB at 1348.070 kb on - strand, within mntB at 1348.112 kb on - strand, within mntB at 1348.118 kb on - strand, within mntB at 1348.154 kb on - strand, within mntB at 1348.177 kb on + strand, within mntB at 1348.188 kb on + strand, within mntB at 1348.251 kb on - strand, within mntB at 1348.340 kb on - strand, within mntB at 1348.352 kb on - strand, within mntB at 1348.368 kb on - strand, within mntB at 1348.390 kb on + strand, within mntB at 1348.398 kb on - strand, within mntB at 1348.413 kb on + strand, within mntB at 1348.433 kb on + strand, within mntB at 1348.448 kb on + strand, within mntB at 1348.471 kb on - strand, within mntB at 1348.518 kb on + strand, within mntB at 1348.548 kb on - strand, within mntB at 1348.549 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.568 kb on + strand, within mntB at 1348.573 kb on + strand, within mntB at 1348.581 kb on - strand, within mntB at 1348.586 kb on + strand, within mntB at 1348.601 kb on - strand, within mntB at 1348.617 kb on - strand, within mntB at 1348.620 kb on + strand, within mntB at 1348.644 kb on + strand, within mntB at 1348.652 kb on - strand, within mntB at 1348.673 kb on + strand, within mntB at 1348.678 kb on + strand, within mntB at 1348.738 kb on - strand at 1348.741 kb on + strand at 1348.764 kb on + strand at 1348.780 kb on - strand at 1348.794 kb on + strand at 1348.796 kb on - strand at 1348.840 kb on - strand at 1348.890 kb on - strand, within Synpcc7942_1319
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 62.5 mM remove 1,346,193 + mntC Synpcc7942_1316 0.11 -1.7 1,346,218 + mntC Synpcc7942_1316 0.14 -1.3 1,346,218 + mntC Synpcc7942_1316 0.14 -1.0 1,346,220 + mntC Synpcc7942_1316 0.14 -0.9 1,346,220 + mntC Synpcc7942_1316 0.14 -1.0 1,346,220 + mntC Synpcc7942_1316 0.14 +1.8 1,346,221 - mntC Synpcc7942_1316 0.14 -1.7 1,346,226 - mntC Synpcc7942_1316 0.14 -1.2 1,346,226 - mntC Synpcc7942_1316 0.14 +0.2 1,346,226 - mntC Synpcc7942_1316 0.14 -0.6 1,346,226 - mntC Synpcc7942_1316 0.14 -1.3 1,346,228 - mntC Synpcc7942_1316 0.15 -0.1 1,346,228 - mntC Synpcc7942_1316 0.15 +0.9 1,346,228 - mntC Synpcc7942_1316 0.15 +1.2 1,346,235 + mntC Synpcc7942_1316 0.15 +1.3 1,346,288 + mntC Synpcc7942_1316 0.20 +1.2 1,346,293 + mntC Synpcc7942_1316 0.21 -0.9 1,346,293 + mntC Synpcc7942_1316 0.21 -1.0 1,346,293 + mntC Synpcc7942_1316 0.21 -0.3 1,346,293 + mntC Synpcc7942_1316 0.21 +1.3 1,346,312 + mntC Synpcc7942_1316 0.23 +0.1 1,346,313 - mntC Synpcc7942_1316 0.23 -0.1 1,346,349 + mntC Synpcc7942_1316 0.26 +0.6 1,346,352 + mntC Synpcc7942_1316 0.26 -0.4 1,346,358 - mntC Synpcc7942_1316 0.27 +0.2 1,346,358 - mntC Synpcc7942_1316 0.27 +1.1 1,346,359 + -0.3 1,346,391 + mntC Synpcc7942_1316 0.30 -1.4 1,346,537 + mntC Synpcc7942_1316 0.44 -0.8 1,346,545 - mntC Synpcc7942_1316 0.45 -0.3 1,346,545 - mntC Synpcc7942_1316 0.45 +0.8 1,346,545 - mntC Synpcc7942_1316 0.45 -0.9 1,346,560 - mntC Synpcc7942_1316 0.47 +0.4 1,346,568 + -0.1 1,346,568 + mntC Synpcc7942_1316 0.47 -0.6 1,346,568 + mntC Synpcc7942_1316 0.47 -1.2 1,346,576 - mntC Synpcc7942_1316 0.48 -0.9 1,346,576 - mntC Synpcc7942_1316 0.48 -0.1 1,346,588 - mntC Synpcc7942_1316 0.49 +0.0 1,346,615 + mntC Synpcc7942_1316 0.52 +0.7 1,346,623 - mntC Synpcc7942_1316 0.53 +0.7 1,346,661 + mntC Synpcc7942_1316 0.56 -0.1 1,346,666 + mntC Synpcc7942_1316 0.57 -0.7 1,346,682 + mntC Synpcc7942_1316 0.58 -0.3 1,346,683 + mntC Synpcc7942_1316 0.58 -1.0 1,346,718 + mntC Synpcc7942_1316 0.62 +1.5 1,346,726 - mntC Synpcc7942_1316 0.63 -1.5 1,346,733 - mntC Synpcc7942_1316 0.63 -0.5 1,346,733 - mntC Synpcc7942_1316 0.63 +1.6 1,346,735 + mntC Synpcc7942_1316 0.63 +0.7 1,346,743 - mntC Synpcc7942_1316 0.64 -0.1 1,346,752 + mntC Synpcc7942_1316 0.65 +0.0 1,346,800 + mntC Synpcc7942_1316 0.70 -1.9 1,346,800 + mntC Synpcc7942_1316 0.70 +0.1 1,346,804 - mntC Synpcc7942_1316 0.70 -0.2 1,346,808 - mntC Synpcc7942_1316 0.70 +0.0 1,346,808 - mntC Synpcc7942_1316 0.70 -0.3 1,346,826 + mntC Synpcc7942_1316 0.72 -1.0 1,346,833 + mntC Synpcc7942_1316 0.73 -0.1 1,346,833 + mntC Synpcc7942_1316 0.73 -3.5 1,346,833 + mntC Synpcc7942_1316 0.73 -2.1 1,346,841 - mntC Synpcc7942_1316 0.74 +0.4 1,346,843 + mntC Synpcc7942_1316 0.74 -2.1 1,346,881 + mntC Synpcc7942_1316 0.77 -0.1 1,346,888 + mntC Synpcc7942_1316 0.78 -0.8 1,346,889 + mntC Synpcc7942_1316 0.78 -2.7 1,346,895 + mntC Synpcc7942_1316 0.79 -2.8 1,346,895 + mntC Synpcc7942_1316 0.79 -4.9 1,346,896 + mntC Synpcc7942_1316 0.79 +1.5 1,346,896 - mntC Synpcc7942_1316 0.79 -2.2 1,346,897 - mntC Synpcc7942_1316 0.79 -1.8 1,346,897 - mntC Synpcc7942_1316 0.79 -0.2 1,346,904 - mntC Synpcc7942_1316 0.80 +0.6 1,346,905 - mntC Synpcc7942_1316 0.80 -1.9 1,346,943 - mntC Synpcc7942_1316 0.83 -0.8 1,346,948 - mntC Synpcc7942_1316 0.84 -1.5 1,346,975 + mntC Synpcc7942_1316 0.87 +0.3 1,346,982 + mntC Synpcc7942_1316 0.87 -0.2 1,346,988 - mntC Synpcc7942_1316 0.88 +1.5 1,346,990 + mntC Synpcc7942_1316 0.88 +0.8 1,346,990 + -0.3 1,346,998 - mntC Synpcc7942_1316 0.89 -1.2 1,347,002 + mntC Synpcc7942_1316 0.89 -0.7 1,347,002 + mntC Synpcc7942_1316 0.89 -0.2 1,347,002 + mntC Synpcc7942_1316 0.89 -1.1 1,347,002 + mntC Synpcc7942_1316 0.89 +0.5 1,347,010 - mntC Synpcc7942_1316 0.90 +1.3 1,347,010 - mntC Synpcc7942_1316 0.90 -2.0 1,347,010 - mntC Synpcc7942_1316 0.90 +0.3 1,347,010 - +0.2 1,347,010 - mntC Synpcc7942_1316 0.90 -0.9 1,347,010 - mntC Synpcc7942_1316 0.90 +0.9 1,347,020 - -0.3 1,347,020 - -1.3 1,347,038 + -1.8 1,347,044 + -2.6 1,347,044 - -0.2 1,347,062 + -0.1 1,347,075 - +0.0 1,347,075 - -1.2 1,347,075 - -0.9 1,347,080 + -0.7 1,347,091 + +2.5 1,347,103 - -0.5 1,347,117 + -1.3 1,347,125 - +0.6 1,347,125 - -0.8 1,347,125 - -0.2 1,347,127 + -0.5 1,347,190 - -1.5 1,347,250 - mntA Synpcc7942_1317 0.10 +0.2 1,347,263 + mntA Synpcc7942_1317 0.12 -1.4 1,347,263 + mntA Synpcc7942_1317 0.12 +0.3 1,347,277 + mntA Synpcc7942_1317 0.14 -1.7 1,347,311 + mntA Synpcc7942_1317 0.19 -1.1 1,347,311 + mntA Synpcc7942_1317 0.19 -0.4 1,347,319 - mntA Synpcc7942_1317 0.20 -0.3 1,347,319 - mntA Synpcc7942_1317 0.20 -1.0 1,347,322 + mntA Synpcc7942_1317 0.20 +1.4 1,347,344 + mntA Synpcc7942_1317 0.23 -0.1 1,347,354 - mntA Synpcc7942_1317 0.25 -0.7 1,347,379 + mntA Synpcc7942_1317 0.28 -0.8 1,347,379 + mntA Synpcc7942_1317 0.28 -0.1 1,347,398 - mntA Synpcc7942_1317 0.30 -0.6 1,347,424 - mntA Synpcc7942_1317 0.34 +0.1 1,347,571 + mntA Synpcc7942_1317 0.54 -0.3 1,347,579 - mntA Synpcc7942_1317 0.55 -1.3 1,347,654 - mntA Synpcc7942_1317 0.65 -0.3 1,347,748 + mntA Synpcc7942_1317 0.78 -1.3 1,347,758 + mntA Synpcc7942_1317 0.79 -0.3 1,347,768 + mntA Synpcc7942_1317 0.81 +0.3 1,347,852 + -0.4 1,347,852 + -0.0 1,347,852 + +1.4 1,347,852 + -0.4 1,347,852 + +0.7 1,347,860 - -1.5 1,347,860 - -0.3 1,347,860 - +0.2 1,347,876 - +0.2 1,347,882 - +0.3 1,347,926 - -0.1 1,347,949 - -0.5 1,347,974 - -1.2 1,348,055 + mntB Synpcc7942_1318 0.16 -2.1 1,348,070 - mntB Synpcc7942_1318 0.18 -0.7 1,348,112 - mntB Synpcc7942_1318 0.23 -0.3 1,348,118 - mntB Synpcc7942_1318 0.24 -0.2 1,348,154 - mntB Synpcc7942_1318 0.28 +0.1 1,348,177 + mntB Synpcc7942_1318 0.31 -0.6 1,348,188 + mntB Synpcc7942_1318 0.32 +0.3 1,348,251 - mntB Synpcc7942_1318 0.39 -0.0 1,348,340 - mntB Synpcc7942_1318 0.50 -2.1 1,348,352 - mntB Synpcc7942_1318 0.51 -0.5 1,348,368 - mntB Synpcc7942_1318 0.53 -2.0 1,348,390 + mntB Synpcc7942_1318 0.56 +1.3 1,348,398 - mntB Synpcc7942_1318 0.56 -0.8 1,348,413 + mntB Synpcc7942_1318 0.58 +1.2 1,348,433 + mntB Synpcc7942_1318 0.61 -0.3 1,348,448 + mntB Synpcc7942_1318 0.62 -2.0 1,348,471 - mntB Synpcc7942_1318 0.65 -2.4 1,348,518 + mntB Synpcc7942_1318 0.71 +3.9 1,348,548 - mntB Synpcc7942_1318 0.74 +1.6 1,348,549 + mntB Synpcc7942_1318 0.74 -0.5 1,348,554 + mntB Synpcc7942_1318 0.75 -0.6 1,348,554 + mntB Synpcc7942_1318 0.75 +1.2 1,348,568 + mntB Synpcc7942_1318 0.76 -0.2 1,348,573 + mntB Synpcc7942_1318 0.77 -0.3 1,348,581 - mntB Synpcc7942_1318 0.78 +1.2 1,348,586 + mntB Synpcc7942_1318 0.79 -1.2 1,348,601 - mntB Synpcc7942_1318 0.80 +0.4 1,348,617 - mntB Synpcc7942_1318 0.82 -0.0 1,348,620 + mntB Synpcc7942_1318 0.83 -1.2 1,348,644 + mntB Synpcc7942_1318 0.85 +0.0 1,348,652 - mntB Synpcc7942_1318 0.86 -3.4 1,348,673 + mntB Synpcc7942_1318 0.89 +0.1 1,348,678 + mntB Synpcc7942_1318 0.89 +0.2 1,348,738 - +0.7 1,348,741 + -0.3 1,348,764 + -1.0 1,348,780 - -0.1 1,348,794 + -2.2 1,348,796 - -0.3 1,348,840 - -0.0 1,348,890 - Synpcc7942_1319 0.10 -0.3
Or see this region's nucleotide sequence