Experiment: BG11 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadC and Synpcc7942_0952 are separated by 143 nucleotides Synpcc7942_0952 and Synpcc7942_0953 are separated by 123 nucleotides Synpcc7942_0953 and Synpcc7942_0954 are separated by 57 nucleotides
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Synpcc7942_0953: Synpcc7942_0953 - hypothetical protein, at 961,744 to 962,208
_0953
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand at 960.743 kb on - strand at 960.752 kb on - strand at 960.767 kb on - strand at 960.802 kb on - strand at 960.818 kb on + strand at 960.818 kb on + strand at 960.826 kb on + strand at 960.826 kb on + strand at 960.834 kb on - strand at 960.891 kb on + strand at 960.892 kb on - strand at 960.895 kb on + strand at 960.905 kb on - strand at 961.003 kb on - strand, within Synpcc7942_0952 at 961.024 kb on - strand, within Synpcc7942_0952 at 961.051 kb on + strand, within Synpcc7942_0952 at 961.093 kb on - strand, within Synpcc7942_0952 at 961.118 kb on + strand, within Synpcc7942_0952 at 961.128 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.153 kb on + strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.227 kb on - strand, within Synpcc7942_0952 at 961.237 kb on + strand, within Synpcc7942_0952 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand at 961.715 kb on - strand at 961.789 kb on + strand at 961.801 kb on - strand at 961.816 kb on - strand, within Synpcc7942_0953 at 961.843 kb on - strand, within Synpcc7942_0953 at 961.887 kb on - strand, within Synpcc7942_0953 at 961.951 kb on - strand, within Synpcc7942_0953 at 961.976 kb on + strand, within Synpcc7942_0953 at 961.986 kb on + strand, within Synpcc7942_0953 at 962.000 kb on - strand, within Synpcc7942_0953 at 962.001 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.090 kb on - strand, within Synpcc7942_0953 at 962.092 kb on - strand, within Synpcc7942_0953 at 962.146 kb on - strand, within Synpcc7942_0953 at 962.175 kb on - strand at 962.189 kb on - strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.205 kb on - strand at 962.212 kb on - strand at 962.212 kb on - strand at 962.216 kb on + strand at 962.236 kb on + strand at 962.242 kb on + strand at 962.242 kb on - strand at 962.242 kb on - strand at 962.249 kb on - strand at 962.285 kb on - strand at 962.316 kb on - strand at 962.319 kb on - strand at 962.353 kb on + strand at 962.353 kb on + strand at 962.361 kb on - strand at 962.386 kb on - strand, within Synpcc7942_0954 at 962.386 kb on - strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.468 kb on - strand, within Synpcc7942_0954 at 962.500 kb on - strand, within Synpcc7942_0954 at 962.503 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.524 kb on + strand, within Synpcc7942_0954 at 962.531 kb on - strand, within Synpcc7942_0954 at 962.539 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.572 kb on + strand, within Synpcc7942_0954 at 962.590 kb on + strand, within Synpcc7942_0954 at 962.598 kb on - strand, within Synpcc7942_0954 at 962.599 kb on - strand, within Synpcc7942_0954
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 62.5 mM remove 959,847 + +0.8 959,850 - +1.0 959,921 + +1.0 959,922 + nadC Synpcc7942_0951 0.10 +0.8 959,923 - nadC Synpcc7942_0951 0.10 +0.9 959,930 - nadC Synpcc7942_0951 0.11 -1.5 960,002 + nadC Synpcc7942_0951 0.19 +0.5 960,018 + nadC Synpcc7942_0951 0.21 +1.5 960,094 + nadC Synpcc7942_0951 0.30 -2.6 960,103 + nadC Synpcc7942_0951 0.31 +0.0 960,118 + nadC Synpcc7942_0951 0.33 -0.6 960,126 - nadC Synpcc7942_0951 0.34 +0.2 960,126 - nadC Synpcc7942_0951 0.34 -0.8 960,137 + nadC Synpcc7942_0951 0.35 +0.2 960,146 - nadC Synpcc7942_0951 0.36 -0.9 960,265 + nadC Synpcc7942_0951 0.50 -0.7 960,273 - nadC Synpcc7942_0951 0.51 -0.3 960,309 + nadC Synpcc7942_0951 0.56 -0.8 960,435 + nadC Synpcc7942_0951 0.70 +1.6 960,443 - nadC Synpcc7942_0951 0.71 +3.2 960,687 + +1.2 960,687 + +0.1 960,695 - +0.2 960,695 - -1.3 960,707 - +0.1 960,707 - -1.0 960,717 - +1.4 960,727 - +1.5 960,735 + -1.2 960,735 + -0.3 960,737 + -0.9 960,743 - -0.1 960,752 - -1.0 960,767 - -1.9 960,802 - -1.6 960,818 + +1.2 960,818 + -0.5 960,826 + +0.1 960,826 + -0.2 960,834 - -1.1 960,891 + -0.1 960,892 - -2.2 960,895 + -2.7 960,905 - -0.1 961,003 - Synpcc7942_0952 0.22 -0.4 961,024 - Synpcc7942_0952 0.25 +0.4 961,051 + Synpcc7942_0952 0.28 -0.2 961,093 - Synpcc7942_0952 0.33 -0.1 961,118 + Synpcc7942_0952 0.36 +0.8 961,128 + Synpcc7942_0952 0.38 -0.1 961,149 + Synpcc7942_0952 0.40 +0.3 961,149 + Synpcc7942_0952 0.40 -2.8 961,153 + Synpcc7942_0952 0.41 -0.2 961,157 - Synpcc7942_0952 0.41 -1.3 961,157 - Synpcc7942_0952 0.41 -0.0 961,227 - Synpcc7942_0952 0.50 -0.1 961,237 + Synpcc7942_0952 0.52 -0.6 961,333 + Synpcc7942_0952 0.64 -2.0 961,349 - Synpcc7942_0952 0.66 -2.5 961,367 + Synpcc7942_0952 0.68 -0.0 961,375 - Synpcc7942_0952 0.69 -1.0 961,415 - Synpcc7942_0952 0.74 -1.2 961,447 + Synpcc7942_0952 0.78 -1.5 961,452 + Synpcc7942_0952 0.79 -1.0 961,474 - Synpcc7942_0952 0.81 -0.6 961,484 - Synpcc7942_0952 0.83 +1.1 961,488 + +0.9 961,511 - Synpcc7942_0952 0.86 +0.0 961,537 - Synpcc7942_0952 0.89 -0.5 961,564 + -0.8 961,564 + -0.5 961,564 + +2.1 961,566 - -1.0 961,567 - -2.5 961,572 - -2.3 961,572 - +0.2 961,574 - +0.4 961,594 - -0.1 961,594 - -0.0 961,594 - +0.5 961,601 + +0.8 961,715 - +0.3 961,789 + +0.3 961,801 - +1.2 961,816 - Synpcc7942_0953 0.15 -1.5 961,843 - Synpcc7942_0953 0.21 +0.8 961,887 - Synpcc7942_0953 0.31 +1.1 961,951 - Synpcc7942_0953 0.45 +0.2 961,976 + Synpcc7942_0953 0.50 -1.9 961,986 + Synpcc7942_0953 0.52 +0.6 962,000 - Synpcc7942_0953 0.55 -1.3 962,001 + Synpcc7942_0953 0.55 -1.1 962,048 + Synpcc7942_0953 0.65 +0.0 962,048 + Synpcc7942_0953 0.65 -1.3 962,048 + Synpcc7942_0953 0.65 -0.9 962,056 - Synpcc7942_0953 0.67 -1.7 962,056 - Synpcc7942_0953 0.67 +0.9 962,056 - Synpcc7942_0953 0.67 +0.1 962,056 - Synpcc7942_0953 0.67 -1.2 962,056 - Synpcc7942_0953 0.67 +0.6 962,056 - Synpcc7942_0953 0.67 -1.0 962,090 - Synpcc7942_0953 0.74 -1.0 962,092 - Synpcc7942_0953 0.75 -1.3 962,146 - Synpcc7942_0953 0.86 -2.3 962,175 - +0.9 962,189 - -0.7 962,204 + -1.1 962,204 + -0.8 962,204 + +2.7 962,204 + -0.3 962,205 - -0.3 962,212 - +0.0 962,212 - -1.9 962,216 + +0.2 962,236 + +0.5 962,242 + -1.1 962,242 - -0.9 962,242 - -0.2 962,249 - +2.8 962,285 - +0.5 962,316 - +0.8 962,319 - -0.3 962,353 + -0.3 962,353 + +0.7 962,361 - -0.2 962,386 - Synpcc7942_0954 0.12 -0.2 962,386 - Synpcc7942_0954 0.12 -0.4 962,434 + Synpcc7942_0954 0.16 -0.2 962,434 + Synpcc7942_0954 0.16 -1.2 962,442 - Synpcc7942_0954 0.17 +0.2 962,442 - Synpcc7942_0954 0.17 +0.8 962,468 - Synpcc7942_0954 0.20 -1.3 962,500 - Synpcc7942_0954 0.23 -0.2 962,503 + Synpcc7942_0954 0.23 -0.3 962,510 + Synpcc7942_0954 0.24 -1.4 962,510 + Synpcc7942_0954 0.24 +0.6 962,524 + Synpcc7942_0954 0.25 -0.4 962,531 - Synpcc7942_0954 0.26 -0.9 962,539 - Synpcc7942_0954 0.26 -0.5 962,548 - Synpcc7942_0954 0.27 +0.6 962,548 - Synpcc7942_0954 0.27 -0.9 962,572 + Synpcc7942_0954 0.30 +1.1 962,590 + Synpcc7942_0954 0.31 -1.2 962,598 - Synpcc7942_0954 0.32 +1.2 962,599 - Synpcc7942_0954 0.32 -1.7
Or see this region's nucleotide sequence