Experiment: BG11 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0045 and Synpcc7942_0046 are separated by 236 nucleotides Synpcc7942_0046 and Synpcc7942_0047 are separated by 7 nucleotides
Synpcc7942_0045: Synpcc7942_0045 - TPR repeat, at 43,572 to 44,927
_0045
Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507
_0046
Synpcc7942_0047: Synpcc7942_0047 - TPR repeat, at 46,515 to 48,881
_0047
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 44.176 kb on - strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.329 kb on + strand, within Synpcc7942_0045 at 44.330 kb on - strand, within Synpcc7942_0045 at 44.345 kb on + strand, within Synpcc7942_0045 at 44.454 kb on - strand, within Synpcc7942_0045 at 44.512 kb on + strand, within Synpcc7942_0045 at 44.582 kb on + strand, within Synpcc7942_0045 at 44.590 kb on - strand, within Synpcc7942_0045 at 44.641 kb on - strand, within Synpcc7942_0045 at 44.759 kb on + strand, within Synpcc7942_0045 at 44.759 kb on - strand, within Synpcc7942_0045 at 44.793 kb on + strand at 44.812 kb on - strand at 44.839 kb on - strand at 44.839 kb on - strand at 44.859 kb on - strand at 44.885 kb on + strand at 44.921 kb on + strand at 44.929 kb on - strand at 44.936 kb on - strand at 44.950 kb on + strand at 44.955 kb on + strand at 44.963 kb on - strand at 44.963 kb on - strand at 44.963 kb on - strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.027 kb on + strand at 45.027 kb on - strand at 45.035 kb on - strand at 45.047 kb on - strand at 45.088 kb on + strand at 45.111 kb on - strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.123 kb on + strand at 45.130 kb on - strand at 45.160 kb on + strand at 45.204 kb on - strand at 45.206 kb on + strand at 45.216 kb on - strand at 45.225 kb on + strand at 45.225 kb on + strand at 45.233 kb on - strand at 45.246 kb on - strand at 45.269 kb on - strand at 45.318 kb on + strand, within Synpcc7942_0046 at 45.385 kb on - strand, within Synpcc7942_0046 at 45.519 kb on - strand, within Synpcc7942_0046 at 45.604 kb on + strand, within Synpcc7942_0046 at 45.630 kb on + strand, within Synpcc7942_0046 at 45.679 kb on - strand, within Synpcc7942_0046 at 45.755 kb on + strand, within Synpcc7942_0046 at 45.887 kb on + strand, within Synpcc7942_0046 at 45.892 kb on + strand, within Synpcc7942_0046 at 45.910 kb on - strand, within Synpcc7942_0046 at 45.911 kb on - strand, within Synpcc7942_0046 at 45.938 kb on - strand, within Synpcc7942_0046 at 45.963 kb on - strand, within Synpcc7942_0046 at 46.060 kb on - strand at 46.107 kb on + strand, within Synpcc7942_0046 at 46.130 kb on - strand, within Synpcc7942_0046 at 46.130 kb on - strand, within Synpcc7942_0046 at 46.147 kb on - strand, within Synpcc7942_0046 at 46.162 kb on - strand, within Synpcc7942_0046 at 46.278 kb on - strand, within Synpcc7942_0046 at 46.297 kb on + strand, within Synpcc7942_0046 at 46.302 kb on + strand, within Synpcc7942_0046 at 46.302 kb on + strand, within Synpcc7942_0046 at 46.313 kb on + strand, within Synpcc7942_0046 at 46.315 kb on + strand, within Synpcc7942_0046 at 46.358 kb on + strand, within Synpcc7942_0046 at 46.363 kb on + strand, within Synpcc7942_0046 at 46.365 kb on + strand, within Synpcc7942_0046 at 46.365 kb on + strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.417 kb on + strand at 46.425 kb on - strand at 46.483 kb on + strand at 46.503 kb on + strand at 46.544 kb on + strand at 46.563 kb on + strand at 46.587 kb on - strand at 46.791 kb on + strand, within Synpcc7942_0047 at 46.838 kb on + strand, within Synpcc7942_0047 at 46.838 kb on + strand, within Synpcc7942_0047 at 46.845 kb on - strand, within Synpcc7942_0047 at 46.846 kb on - strand, within Synpcc7942_0047 at 46.846 kb on - strand, within Synpcc7942_0047 at 46.848 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.878 kb on - strand, within Synpcc7942_0047 at 46.930 kb on + strand, within Synpcc7942_0047 at 46.940 kb on + strand, within Synpcc7942_0047 at 46.986 kb on + strand, within Synpcc7942_0047 at 46.986 kb on + strand, within Synpcc7942_0047 at 46.994 kb on - strand, within Synpcc7942_0047 at 47.028 kb on - strand, within Synpcc7942_0047 at 47.034 kb on + strand, within Synpcc7942_0047 at 47.034 kb on + strand, within Synpcc7942_0047 at 47.049 kb on + strand, within Synpcc7942_0047 at 47.052 kb on - strand, within Synpcc7942_0047 at 47.052 kb on - strand, within Synpcc7942_0047 at 47.065 kb on + strand, within Synpcc7942_0047 at 47.095 kb on + strand, within Synpcc7942_0047 at 47.105 kb on + strand, within Synpcc7942_0047 at 47.123 kb on + strand, within Synpcc7942_0047 at 47.124 kb on + strand, within Synpcc7942_0047 at 47.375 kb on - strand, within Synpcc7942_0047 at 47.423 kb on + strand, within Synpcc7942_0047 at 47.424 kb on + strand, within Synpcc7942_0047 at 47.432 kb on - strand, within Synpcc7942_0047
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 62.5 mM remove 44,176 - Synpcc7942_0045 0.45 -0.9 44,290 + Synpcc7942_0045 0.53 +0.7 44,290 + Synpcc7942_0045 0.53 -0.5 44,322 + Synpcc7942_0045 0.55 +1.2 44,322 + Synpcc7942_0045 0.55 +0.6 44,329 + Synpcc7942_0045 0.56 +0.7 44,330 - Synpcc7942_0045 0.56 +0.6 44,345 + Synpcc7942_0045 0.57 +0.5 44,454 - Synpcc7942_0045 0.65 +0.3 44,512 + Synpcc7942_0045 0.69 -1.4 44,582 + Synpcc7942_0045 0.74 -0.6 44,590 - Synpcc7942_0045 0.75 +0.1 44,641 - Synpcc7942_0045 0.79 +0.2 44,759 + Synpcc7942_0045 0.88 +0.9 44,759 - Synpcc7942_0045 0.88 +1.0 44,793 + +1.7 44,812 - -0.2 44,839 - -1.4 44,839 - -0.2 44,859 - +0.6 44,885 + -0.7 44,921 + +1.0 44,929 - +0.0 44,936 - -1.7 44,950 + -2.2 44,955 + +3.0 44,963 - -0.7 44,963 - -1.3 44,963 - +3.1 45,018 + -0.4 45,018 + -1.4 45,018 + -2.7 45,018 + +1.2 45,018 + -0.4 45,026 - +3.2 45,026 - -0.7 45,026 - -0.6 45,027 + +0.1 45,027 - -1.4 45,035 - -0.7 45,047 - +0.1 45,088 + -1.0 45,111 - +0.1 45,113 + +0.9 45,113 + +0.4 45,113 + -0.1 45,113 + +1.5 45,113 + -0.6 45,113 + -1.9 45,121 - +0.3 45,121 - -2.4 45,121 - -0.1 45,121 - +1.9 45,123 + -1.6 45,130 - -1.1 45,160 + -0.5 45,204 - -0.9 45,206 + +0.7 45,216 - -1.1 45,225 + +2.1 45,225 + -0.3 45,233 - +0.6 45,246 - +0.4 45,269 - +2.0 45,318 + Synpcc7942_0046 0.11 +0.4 45,385 - Synpcc7942_0046 0.16 -0.5 45,519 - Synpcc7942_0046 0.26 +0.6 45,604 + Synpcc7942_0046 0.33 +1.4 45,630 + Synpcc7942_0046 0.35 +1.3 45,679 - Synpcc7942_0046 0.38 +0.4 45,755 + Synpcc7942_0046 0.44 -0.4 45,887 + Synpcc7942_0046 0.54 +1.2 45,892 + Synpcc7942_0046 0.54 +1.6 45,910 - Synpcc7942_0046 0.56 -0.6 45,911 - Synpcc7942_0046 0.56 +0.4 45,938 - Synpcc7942_0046 0.58 -1.7 45,963 - Synpcc7942_0046 0.59 -0.4 46,060 - +1.1 46,107 + Synpcc7942_0046 0.70 -0.9 46,130 - Synpcc7942_0046 0.72 +1.0 46,130 - Synpcc7942_0046 0.72 -0.9 46,147 - Synpcc7942_0046 0.73 +1.1 46,162 - Synpcc7942_0046 0.74 -0.7 46,278 - Synpcc7942_0046 0.83 +0.9 46,297 + Synpcc7942_0046 0.84 +1.9 46,302 + Synpcc7942_0046 0.85 +1.4 46,302 + Synpcc7942_0046 0.85 +0.3 46,313 + Synpcc7942_0046 0.85 +1.2 46,315 + Synpcc7942_0046 0.86 +1.3 46,358 + Synpcc7942_0046 0.89 +1.2 46,363 + Synpcc7942_0046 0.89 -0.5 46,365 + Synpcc7942_0046 0.89 +0.1 46,365 + Synpcc7942_0046 0.89 +1.0 46,366 - Synpcc7942_0046 0.89 +1.4 46,366 - Synpcc7942_0046 0.89 +0.9 46,366 - Synpcc7942_0046 0.89 +0.2 46,417 + +1.8 46,425 - +1.6 46,483 + -0.9 46,503 + -1.9 46,544 + +0.0 46,563 + +1.4 46,587 - +0.7 46,791 + Synpcc7942_0047 0.12 +0.1 46,838 + Synpcc7942_0047 0.14 +0.1 46,838 + Synpcc7942_0047 0.14 +0.5 46,845 - Synpcc7942_0047 0.14 +0.9 46,846 - Synpcc7942_0047 0.14 +1.1 46,846 - Synpcc7942_0047 0.14 -0.0 46,848 + Synpcc7942_0047 0.14 -1.3 46,870 + Synpcc7942_0047 0.15 +0.5 46,870 + Synpcc7942_0047 0.15 -1.5 46,870 + Synpcc7942_0047 0.15 +0.9 46,870 + Synpcc7942_0047 0.15 +1.4 46,870 + Synpcc7942_0047 0.15 +0.4 46,878 - Synpcc7942_0047 0.15 -0.3 46,930 + Synpcc7942_0047 0.18 +2.0 46,940 + Synpcc7942_0047 0.18 -0.1 46,986 + Synpcc7942_0047 0.20 +0.4 46,986 + Synpcc7942_0047 0.20 -1.0 46,994 - Synpcc7942_0047 0.20 +3.9 47,028 - Synpcc7942_0047 0.22 -1.5 47,034 + Synpcc7942_0047 0.22 +2.3 47,034 + Synpcc7942_0047 0.22 +2.8 47,049 + Synpcc7942_0047 0.23 -0.6 47,052 - Synpcc7942_0047 0.23 +1.4 47,052 - Synpcc7942_0047 0.23 +2.4 47,065 + Synpcc7942_0047 0.23 +2.4 47,095 + Synpcc7942_0047 0.25 +1.0 47,105 + Synpcc7942_0047 0.25 -0.2 47,123 + Synpcc7942_0047 0.26 +0.8 47,124 + Synpcc7942_0047 0.26 -0.0 47,375 - Synpcc7942_0047 0.36 -0.8 47,423 + Synpcc7942_0047 0.38 +0.9 47,424 + Synpcc7942_0047 0.38 -0.9 47,432 - Synpcc7942_0047 0.39 +0.7
Or see this region's nucleotide sequence