Experiment: BG11 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0044 and Synpcc7942_0045 are separated by 94 nucleotides Synpcc7942_0045 and Synpcc7942_0046 are separated by 236 nucleotides
Synpcc7942_0044: Synpcc7942_0044 - hypothetical protein, at 41,495 to 43,477
_0044
Synpcc7942_0045: Synpcc7942_0045 - TPR repeat, at 43,572 to 44,927
_0045
Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507
_0046
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.572 kb on - strand, within Synpcc7942_0044 at 42.579 kb on - strand at 42.581 kb on + strand, within Synpcc7942_0044 at 42.611 kb on - strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.670 kb on - strand, within Synpcc7942_0044 at 42.671 kb on - strand, within Synpcc7942_0044 at 42.673 kb on + strand, within Synpcc7942_0044 at 42.799 kb on + strand, within Synpcc7942_0044 at 42.814 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.868 kb on - strand, within Synpcc7942_0044 at 42.877 kb on + strand, within Synpcc7942_0044 at 42.888 kb on + strand, within Synpcc7942_0044 at 42.900 kb on - strand, within Synpcc7942_0044 at 42.901 kb on + strand, within Synpcc7942_0044 at 42.909 kb on + strand, within Synpcc7942_0044 at 42.932 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.954 kb on - strand, within Synpcc7942_0044 at 42.978 kb on - strand, within Synpcc7942_0044 at 43.047 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.086 kb on + strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.104 kb on + strand, within Synpcc7942_0044 at 43.119 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.153 kb on - strand, within Synpcc7942_0044 at 43.169 kb on - strand, within Synpcc7942_0044 at 43.201 kb on + strand, within Synpcc7942_0044 at 43.209 kb on - strand, within Synpcc7942_0044 at 43.241 kb on + strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.258 kb on + strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.268 kb on + strand at 43.268 kb on + strand, within Synpcc7942_0044 at 43.268 kb on + strand, within Synpcc7942_0044 at 43.270 kb on + strand, within Synpcc7942_0044 at 43.275 kb on + strand at 43.283 kb on - strand at 43.285 kb on + strand at 43.305 kb on + strand at 43.325 kb on - strand at 43.336 kb on + strand at 43.361 kb on + strand at 43.384 kb on + strand at 43.384 kb on + strand at 43.392 kb on - strand at 43.416 kb on - strand at 43.448 kb on - strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.479 kb on - strand at 43.481 kb on - strand at 43.487 kb on - strand at 43.539 kb on - strand at 43.567 kb on + strand at 43.567 kb on + strand at 43.572 kb on - strand at 43.575 kb on - strand at 43.584 kb on - strand at 43.588 kb on + strand at 43.588 kb on + strand at 43.596 kb on - strand at 43.616 kb on - strand at 43.624 kb on - strand at 43.626 kb on - strand at 43.699 kb on + strand at 43.708 kb on + strand, within Synpcc7942_0045 at 43.718 kb on + strand, within Synpcc7942_0045 at 43.745 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand at 43.749 kb on + strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.766 kb on + strand, within Synpcc7942_0045 at 43.768 kb on + strand, within Synpcc7942_0045 at 43.779 kb on - strand at 43.796 kb on - strand, within Synpcc7942_0045 at 43.852 kb on + strand, within Synpcc7942_0045 at 43.852 kb on - strand, within Synpcc7942_0045 at 43.871 kb on + strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.896 kb on - strand, within Synpcc7942_0045 at 43.909 kb on - strand, within Synpcc7942_0045 at 43.918 kb on - strand, within Synpcc7942_0045 at 43.922 kb on + strand at 43.922 kb on + strand, within Synpcc7942_0045 at 43.931 kb on - strand, within Synpcc7942_0045 at 43.992 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 44.004 kb on + strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.044 kb on - strand, within Synpcc7942_0045 at 44.059 kb on + strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.133 kb on + strand, within Synpcc7942_0045 at 44.138 kb on + strand, within Synpcc7942_0045 at 44.176 kb on - strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.329 kb on + strand, within Synpcc7942_0045 at 44.330 kb on - strand, within Synpcc7942_0045 at 44.345 kb on + strand, within Synpcc7942_0045 at 44.454 kb on - strand, within Synpcc7942_0045 at 44.512 kb on + strand, within Synpcc7942_0045 at 44.582 kb on + strand, within Synpcc7942_0045 at 44.590 kb on - strand, within Synpcc7942_0045 at 44.641 kb on - strand, within Synpcc7942_0045 at 44.759 kb on + strand, within Synpcc7942_0045 at 44.759 kb on - strand, within Synpcc7942_0045 at 44.793 kb on + strand at 44.812 kb on - strand at 44.839 kb on - strand at 44.839 kb on - strand at 44.859 kb on - strand at 44.885 kb on + strand at 44.921 kb on + strand at 44.929 kb on - strand at 44.936 kb on - strand at 44.950 kb on + strand at 44.955 kb on + strand at 44.963 kb on - strand at 44.963 kb on - strand at 44.963 kb on - strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.027 kb on + strand at 45.027 kb on - strand at 45.035 kb on - strand at 45.047 kb on - strand at 45.088 kb on + strand at 45.111 kb on - strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.123 kb on + strand at 45.130 kb on - strand at 45.160 kb on + strand at 45.204 kb on - strand at 45.206 kb on + strand at 45.216 kb on - strand at 45.225 kb on + strand at 45.225 kb on + strand at 45.233 kb on - strand at 45.246 kb on - strand at 45.269 kb on - strand at 45.318 kb on + strand, within Synpcc7942_0046 at 45.385 kb on - strand, within Synpcc7942_0046 at 45.519 kb on - strand, within Synpcc7942_0046 at 45.604 kb on + strand, within Synpcc7942_0046 at 45.630 kb on + strand, within Synpcc7942_0046 at 45.679 kb on - strand, within Synpcc7942_0046 at 45.755 kb on + strand, within Synpcc7942_0046 at 45.887 kb on + strand, within Synpcc7942_0046 at 45.892 kb on + strand, within Synpcc7942_0046 at 45.910 kb on - strand, within Synpcc7942_0046 at 45.911 kb on - strand, within Synpcc7942_0046
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 62.5 mM remove 42,572 - Synpcc7942_0044 0.54 +0.5 42,579 - +0.6 42,581 + Synpcc7942_0044 0.55 -1.6 42,611 - Synpcc7942_0044 0.56 +0.0 42,668 + Synpcc7942_0044 0.59 +0.5 42,668 + Synpcc7942_0044 0.59 -2.1 42,668 + Synpcc7942_0044 0.59 -0.9 42,670 - Synpcc7942_0044 0.59 -0.1 42,671 - Synpcc7942_0044 0.59 +0.3 42,673 + Synpcc7942_0044 0.59 -0.4 42,799 + Synpcc7942_0044 0.66 +1.1 42,814 + Synpcc7942_0044 0.67 -1.3 42,848 + Synpcc7942_0044 0.68 -0.6 42,848 + Synpcc7942_0044 0.68 +0.3 42,868 - Synpcc7942_0044 0.69 +1.0 42,877 + Synpcc7942_0044 0.70 -0.1 42,888 + Synpcc7942_0044 0.70 -0.6 42,900 - Synpcc7942_0044 0.71 -1.7 42,901 + Synpcc7942_0044 0.71 +1.2 42,909 + Synpcc7942_0044 0.71 -1.7 42,932 + Synpcc7942_0044 0.72 -0.6 42,938 + Synpcc7942_0044 0.73 -1.1 42,938 + Synpcc7942_0044 0.73 +0.3 42,938 + Synpcc7942_0044 0.73 +0.1 42,938 + Synpcc7942_0044 0.73 -1.8 42,946 - Synpcc7942_0044 0.73 +1.7 42,946 - Synpcc7942_0044 0.73 -2.6 42,946 - Synpcc7942_0044 0.73 +0.4 42,946 - Synpcc7942_0044 0.73 +0.9 42,946 - Synpcc7942_0044 0.73 -1.6 42,946 - Synpcc7942_0044 0.73 +0.1 42,954 - Synpcc7942_0044 0.74 -0.4 42,978 - Synpcc7942_0044 0.75 -0.7 43,047 + Synpcc7942_0044 0.78 -0.7 43,053 + Synpcc7942_0044 0.79 -2.4 43,053 + Synpcc7942_0044 0.79 +2.0 43,086 + Synpcc7942_0044 0.80 -0.3 43,094 - Synpcc7942_0044 0.81 -1.0 43,094 - Synpcc7942_0044 0.81 -1.1 43,104 + Synpcc7942_0044 0.81 +0.6 43,119 + Synpcc7942_0044 0.82 +0.0 43,145 + Synpcc7942_0044 0.83 -0.8 43,145 + Synpcc7942_0044 0.83 -2.0 43,145 + Synpcc7942_0044 0.83 -1.8 43,151 + Synpcc7942_0044 0.84 -0.8 43,151 + Synpcc7942_0044 0.84 -1.4 43,153 - Synpcc7942_0044 0.84 -0.7 43,169 - Synpcc7942_0044 0.84 +1.4 43,201 + Synpcc7942_0044 0.86 -0.4 43,209 - Synpcc7942_0044 0.86 -0.6 43,241 + Synpcc7942_0044 0.88 -1.4 43,244 - Synpcc7942_0044 0.88 +1.1 43,244 - Synpcc7942_0044 0.88 -0.9 43,258 + Synpcc7942_0044 0.89 +0.1 43,266 - Synpcc7942_0044 0.89 -1.0 43,266 - Synpcc7942_0044 0.89 -1.0 43,268 + +1.4 43,268 + Synpcc7942_0044 0.89 -2.2 43,268 + Synpcc7942_0044 0.89 +1.9 43,270 + Synpcc7942_0044 0.90 -1.6 43,275 + +0.9 43,283 - -1.1 43,285 + +0.2 43,305 + -0.4 43,325 - -0.4 43,336 + +0.2 43,361 + -0.6 43,384 + -1.4 43,384 + -0.6 43,392 - +1.0 43,416 - +0.3 43,448 - -0.8 43,471 + +0.2 43,471 + +0.2 43,471 + -1.0 43,473 + -0.3 43,473 + -2.0 43,473 + +0.6 43,479 - +0.1 43,481 - +0.3 43,487 - -0.0 43,539 - +0.4 43,567 + -0.1 43,567 + -1.3 43,572 - -0.2 43,575 - +1.2 43,584 - -0.4 43,588 + +0.4 43,588 + +0.7 43,596 - +0.2 43,616 - -1.1 43,624 - +0.4 43,626 - +1.2 43,699 + +0.7 43,708 + Synpcc7942_0045 0.10 +0.6 43,718 + Synpcc7942_0045 0.11 -0.8 43,745 + Synpcc7942_0045 0.13 +0.0 43,749 + Synpcc7942_0045 0.13 +0.8 43,749 + Synpcc7942_0045 0.13 -0.2 43,749 + Synpcc7942_0045 0.13 +0.8 43,749 + Synpcc7942_0045 0.13 +0.6 43,749 + Synpcc7942_0045 0.13 +1.9 43,749 + Synpcc7942_0045 0.13 +0.4 43,749 + +0.9 43,749 + Synpcc7942_0045 0.13 +0.0 43,757 - Synpcc7942_0045 0.14 +0.6 43,757 - Synpcc7942_0045 0.14 +1.0 43,757 - Synpcc7942_0045 0.14 +2.6 43,757 - Synpcc7942_0045 0.14 +0.6 43,766 + Synpcc7942_0045 0.14 +1.3 43,768 + Synpcc7942_0045 0.14 +1.2 43,779 - +0.4 43,796 - Synpcc7942_0045 0.17 +0.4 43,852 + Synpcc7942_0045 0.21 -0.3 43,852 - Synpcc7942_0045 0.21 +1.7 43,871 + Synpcc7942_0045 0.22 -0.5 43,872 - Synpcc7942_0045 0.22 +0.9 43,872 - Synpcc7942_0045 0.22 -1.6 43,893 + Synpcc7942_0045 0.24 -1.6 43,893 + Synpcc7942_0045 0.24 +2.9 43,896 - Synpcc7942_0045 0.24 -1.1 43,909 - Synpcc7942_0045 0.25 -0.6 43,918 - Synpcc7942_0045 0.26 -1.3 43,922 + +0.4 43,922 + Synpcc7942_0045 0.26 -0.4 43,931 - Synpcc7942_0045 0.26 +0.6 43,992 + Synpcc7942_0045 0.31 +0.6 43,999 + Synpcc7942_0045 0.31 +1.4 43,999 + Synpcc7942_0045 0.31 -1.1 44,004 + Synpcc7942_0045 0.32 +0.6 44,032 - Synpcc7942_0045 0.34 +0.7 44,032 - Synpcc7942_0045 0.34 -3.2 44,034 + Synpcc7942_0045 0.34 -0.7 44,034 + Synpcc7942_0045 0.34 -0.0 44,034 + Synpcc7942_0045 0.34 +0.9 44,034 + Synpcc7942_0045 0.34 -1.1 44,034 + Synpcc7942_0045 0.34 +0.2 44,036 + Synpcc7942_0045 0.34 +1.6 44,036 + Synpcc7942_0045 0.34 +1.4 44,042 - Synpcc7942_0045 0.35 -1.6 44,042 - Synpcc7942_0045 0.35 +0.3 44,042 - Synpcc7942_0045 0.35 -0.4 44,042 - Synpcc7942_0045 0.35 +0.0 44,042 - Synpcc7942_0045 0.35 -0.0 44,044 - Synpcc7942_0045 0.35 +1.7 44,059 + Synpcc7942_0045 0.36 +0.3 44,067 - Synpcc7942_0045 0.37 +0.5 44,067 - Synpcc7942_0045 0.37 -0.4 44,067 - Synpcc7942_0045 0.37 -1.4 44,133 + Synpcc7942_0045 0.41 +0.9 44,138 + Synpcc7942_0045 0.42 +1.4 44,176 - Synpcc7942_0045 0.45 -0.9 44,290 + Synpcc7942_0045 0.53 +0.7 44,290 + Synpcc7942_0045 0.53 -0.5 44,322 + Synpcc7942_0045 0.55 +1.2 44,322 + Synpcc7942_0045 0.55 +0.6 44,329 + Synpcc7942_0045 0.56 +0.7 44,330 - Synpcc7942_0045 0.56 +0.6 44,345 + Synpcc7942_0045 0.57 +0.5 44,454 - Synpcc7942_0045 0.65 +0.3 44,512 + Synpcc7942_0045 0.69 -1.4 44,582 + Synpcc7942_0045 0.74 -0.6 44,590 - Synpcc7942_0045 0.75 +0.1 44,641 - Synpcc7942_0045 0.79 +0.2 44,759 + Synpcc7942_0045 0.88 +0.9 44,759 - Synpcc7942_0045 0.88 +1.0 44,793 + +1.7 44,812 - -0.2 44,839 - -1.4 44,839 - -0.2 44,859 - +0.6 44,885 + -0.7 44,921 + +1.0 44,929 - +0.0 44,936 - -1.7 44,950 + -2.2 44,955 + +3.0 44,963 - -0.7 44,963 - -1.3 44,963 - +3.1 45,018 + -0.4 45,018 + -1.4 45,018 + -2.7 45,018 + +1.2 45,018 + -0.4 45,026 - +3.2 45,026 - -0.7 45,026 - -0.6 45,027 + +0.1 45,027 - -1.4 45,035 - -0.7 45,047 - +0.1 45,088 + -1.0 45,111 - +0.1 45,113 + +0.9 45,113 + +0.4 45,113 + -0.1 45,113 + +1.5 45,113 + -0.6 45,113 + -1.9 45,121 - +0.3 45,121 - -2.4 45,121 - -0.1 45,121 - +1.9 45,123 + -1.6 45,130 - -1.1 45,160 + -0.5 45,204 - -0.9 45,206 + +0.7 45,216 - -1.1 45,225 + +2.1 45,225 + -0.3 45,233 - +0.6 45,246 - +0.4 45,269 - +2.0 45,318 + Synpcc7942_0046 0.11 +0.4 45,385 - Synpcc7942_0046 0.16 -0.5 45,519 - Synpcc7942_0046 0.26 +0.6 45,604 + Synpcc7942_0046 0.33 +1.4 45,630 + Synpcc7942_0046 0.35 +1.3 45,679 - Synpcc7942_0046 0.38 +0.4 45,755 + Synpcc7942_0046 0.44 -0.4 45,887 + Synpcc7942_0046 0.54 +1.2 45,892 + Synpcc7942_0046 0.54 +1.6 45,910 - Synpcc7942_0046 0.56 -0.6 45,911 - Synpcc7942_0046 0.56 +0.4
Or see this region's nucleotide sequence