Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22810

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,235,466	+		HSERO_RS22805	0.47	+0.2
5,235,500	-		HSERO_RS22805	0.49	-0.1
5,235,749	-		HSERO_RS22805	0.63	-0.4
5,235,928	-		HSERO_RS22805	0.73	+1.0
5,235,928	-				+2.0
5,235,994	-		HSERO_RS22805	0.76	+0.1
5,236,036	+		HSERO_RS22805	0.79	-1.8
5,236,085	+		HSERO_RS22805	0.82	+1.0
5,236,110	+		HSERO_RS22805	0.83	-1.0
5,236,118	-				-1.2
5,236,129	+		HSERO_RS22805	0.84	-0.6
5,236,305	+				-0.7
5,236,344	+				+0.0
5,236,516	-				+0.8
5,236,656	+		HSERO_RS22810	0.18	+1.3
5,236,743	+		HSERO_RS22810	0.25	+0.8
5,237,010	-		HSERO_RS22810	0.46	+1.2
5,237,017	+		HSERO_RS22810	0.47	+0.9
5,237,127	+		HSERO_RS22810	0.55	+0.8
5,237,207	+		HSERO_RS22810	0.62	-1.1
5,237,207	+		HSERO_RS22810	0.62	-0.3
5,237,344	-		HSERO_RS22810	0.72	-0.4
5,237,380	-		HSERO_RS22810	0.75	-0.0
5,237,623	-				-0.1
5,237,673	+				-0.6
5,237,817	+				+1.1
5,237,846	+				-1.2
5,237,876	+				+1.1
5,237,881	+				-1.3
5,238,100	+		HSERO_RS22815	0.59	+2.4
5,238,109	+		HSERO_RS22815	0.62	-0.6
5,238,277	-				-0.6
5,238,281	+				+0.1
5,238,289	-				+0.5
5,238,398	+		HSERO_RS22820	0.30	-1.4
5,238,398	+		HSERO_RS22820	0.30	-0.6
5,238,398	+		HSERO_RS22820	0.30	-0.9
5,238,398	+		HSERO_RS22820	0.30	-0.1
5,238,598	+				+0.3
5,238,598	-				-1.2