Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22725

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,211,207	+		HSERO_RS22720	0.37	-0.8
5,211,320	+		HSERO_RS22720	0.44	+0.9
5,211,440	-		HSERO_RS22720	0.52	-3.4
5,211,504	+		HSERO_RS22720	0.56	-0.6
5,211,549	+		HSERO_RS22720	0.59	+0.2
5,211,580	-		HSERO_RS22720	0.61	-1.0
5,211,638	-		HSERO_RS22720	0.65	-0.9
5,211,705	-		HSERO_RS22720	0.70	-3.2
5,212,000	-		HSERO_RS22720	0.89	-0.3
5,212,000	-		HSERO_RS22720	0.89	-0.7
5,212,000	-		HSERO_RS22720	0.89	-1.5
5,212,209	+				-3.3
5,212,209	+				-1.1
5,212,306	+		HSERO_RS22725	0.21	-2.6
5,212,535	-		HSERO_RS22725	0.53	-1.8
5,212,548	+		HSERO_RS22725	0.55	-0.8
5,212,662	+		HSERO_RS22725	0.71	-1.5
5,212,672	+		HSERO_RS22725	0.73	-0.7
5,213,259	+		HSERO_RS22730	0.27	-4.2
5,213,306	-		HSERO_RS22730	0.31	-0.4
5,213,351	-		HSERO_RS22730	0.34	-0.8
5,213,366	+		HSERO_RS22730	0.35	-0.8
5,213,575	+		HSERO_RS22730	0.51	-1.6
5,213,683	+		HSERO_RS22730	0.59	+0.0