Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21265

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,867,693	-		HSERO_RS21260	0.52	-0.3
4,867,758	+		HSERO_RS21260	0.58	+0.9
4,867,824	-		HSERO_RS21260	0.64	+1.5
4,867,908	-		HSERO_RS21260	0.72	-0.4
4,867,989	+		HSERO_RS21260	0.80	+0.3
4,868,180	-				-3.2
4,868,194	+				-0.3
4,868,218	-				+0.3
4,868,570	+				+0.9
4,868,608	+				-0.4
4,868,681	+				-0.1
4,868,720	+		HSERO_RS21265	0.14	-1.9
4,868,773	+		HSERO_RS21265	0.21	-0.1
4,868,812	-		HSERO_RS21265	0.26	+2.5
4,868,959	-		HSERO_RS21265	0.46	+2.1
4,869,141	-		HSERO_RS21265	0.71	+0.4
4,869,310	+				+0.5
4,869,351	+				-0.4
4,869,452	-				-0.2
4,869,510	-				-2.3
4,869,640	+				-0.5
4,869,678	-				-0.2
4,869,689	-				-1.1
4,869,726	-		HSERO_RS21270	0.11	+0.7
4,869,837	+		HSERO_RS21270	0.18	-2.5
4,869,962	-		HSERO_RS21270	0.27	-0.0
4,870,001	+		HSERO_RS21270	0.30	-0.9
4,870,086	-		HSERO_RS21270	0.35	+0.6
4,870,132	+		HSERO_RS21270	0.39	-0.4
4,870,194	+		HSERO_RS21270	0.43	+0.3
4,870,315	+		HSERO_RS21270	0.51	-0.0