Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21255

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,865,336	-		HSERO_RS21250	0.17	-0.2
4,865,372	-		HSERO_RS21250	0.22	+0.6
4,865,671	+		HSERO_RS21250	0.62	+0.3
4,865,774	+		HSERO_RS21250	0.76	-0.2
4,865,981	+				+0.2
4,865,989	-				-1.2
4,865,992	-				+0.9
4,865,999	-				+0.0
4,866,016	-				-2.1
4,866,072	-				+0.2
4,866,088	-				-1.7
4,866,097	+				-2.7
4,866,097	+				+0.1
4,866,236	+				-0.2
4,866,339	+				-0.2
4,866,371	-				-0.3
4,866,374	+		HSERO_RS21255	0.10	-2.2
4,866,374	+		HSERO_RS21255	0.10	-0.6
4,866,374	+		HSERO_RS21255	0.10	+2.1
4,866,374	+		HSERO_RS21255	0.10	-1.0
4,866,374	+		HSERO_RS21255	0.10	-0.0
4,866,374	+		HSERO_RS21255	0.10	+0.2
4,866,374	+		HSERO_RS21255	0.10	-1.3
4,866,374	+		HSERO_RS21255	0.10	-0.7
4,866,382	-		HSERO_RS21255	0.12	+3.1
4,866,382	-		HSERO_RS21255	0.12	-0.6
4,866,582	+		HSERO_RS21255	0.48	-1.4
4,866,748	-		HSERO_RS21255	0.79	+0.3
4,866,776	+		HSERO_RS21255	0.84	+1.0
4,866,977	+				+0.2
4,867,105	+				-1.0
4,867,118	+				-2.8
4,867,207	+				-0.4
4,867,294	+		HSERO_RS21260	0.14	-1.2
4,867,294	+		HSERO_RS21260	0.14	-0.4
4,867,302	-		HSERO_RS21260	0.15	+1.1
4,867,313	+		HSERO_RS21260	0.16	-0.1
4,867,333	-				+1.1
4,867,371	-		HSERO_RS21260	0.22	-0.6
4,867,485	+		HSERO_RS21260	0.32	+0.6
4,867,538	+		HSERO_RS21260	0.37	-0.0
4,867,590	-		HSERO_RS21260	0.42	-0.1
4,867,693	-		HSERO_RS21260	0.52	-0.3
4,867,758	+		HSERO_RS21260	0.58	+0.9
4,867,824	-		HSERO_RS21260	0.64	+1.5