Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21245

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,863,605	+		HSERO_RS21235	0.87	+0.9
4,863,865	-				-2.7
4,863,901	-				-0.2
4,863,974	-				+0.1
4,864,055	-		HSERO_RS21240	0.22	+1.5
4,864,126	+		HSERO_RS21240	0.32	+0.3
4,864,505	+		HSERO_RS21240	0.89	+1.5
4,864,513	-				+0.1
4,864,591	+				-2.1
4,864,610	+				+0.2
4,864,655	+		HSERO_RS21245	0.12	-0.8
4,864,752	+		HSERO_RS21245	0.27	+0.5
4,864,760	-		HSERO_RS21245	0.28	+0.1
4,864,760	-		HSERO_RS21245	0.28	-0.8
4,864,760	-		HSERO_RS21245	0.28	-1.5
4,864,981	-		HSERO_RS21245	0.62	-0.2
4,865,082	+		HSERO_RS21245	0.77	-0.7
4,865,257	+				+2.0
4,865,336	-		HSERO_RS21250	0.17	-0.2
4,865,372	-		HSERO_RS21250	0.22	+0.6
4,865,671	+		HSERO_RS21250	0.62	+0.3
4,865,774	+		HSERO_RS21250	0.76	-0.2
4,865,981	+				+0.2
4,865,989	-				-1.2
4,865,992	-				+0.9
4,865,999	-				+0.0
4,866,016	-				-2.1
4,866,072	-				+0.2
4,866,088	-				-1.7
4,866,097	+				-2.7
4,866,097	+				+0.1