Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20550

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,711,264	+				-2.5
4,711,556	-		HSERO_RS20540	0.48	+0.4
4,711,688	+		HSERO_RS20540	0.65	+2.1
4,711,703	+		HSERO_RS20540	0.67	+0.7
4,711,808	-		HSERO_RS20540	0.81	-0.4
4,711,864	+		HSERO_RS20540	0.89	+0.6
4,711,918	-				+0.3
4,711,960	-				-0.1
4,712,007	-		HSERO_RS20545	0.11	-0.5
4,712,053	+		HSERO_RS20545	0.29	+0.3
4,712,061	-		HSERO_RS20545	0.33	-0.1
4,712,183	+		HSERO_RS20545	0.82	-0.9
4,712,320	+				-0.3
4,712,445	+		HSERO_RS20550	0.15	+2.4
4,712,445	+		HSERO_RS20550	0.15	-0.1
4,712,453	-		HSERO_RS20550	0.15	+0.5
4,712,677	+		HSERO_RS20550	0.32	+0.4
4,712,682	+		HSERO_RS20550	0.32	+0.7
4,712,685	-		HSERO_RS20550	0.32	+0.7
4,712,768	+		HSERO_RS20550	0.38	-1.3
4,712,802	+		HSERO_RS20550	0.41	-0.2
4,712,828	-		HSERO_RS20550	0.42	+1.2
4,712,848	-		HSERO_RS20550	0.44	+3.7
4,712,935	+		HSERO_RS20550	0.50	-0.8
4,712,956	-		HSERO_RS20550	0.52	+0.5
4,712,987	+		HSERO_RS20550	0.54	-0.0
4,713,184	-		HSERO_RS20550	0.68	-4.1
4,713,255	-		HSERO_RS20550	0.73	+0.4
4,713,341	-		HSERO_RS20550	0.79	+0.4
4,713,389	+		HSERO_RS20550	0.83	+0.5
4,713,514	-				+0.6
4,713,800	-		HSERO_RS20555	0.19	+0.6
4,714,123	-		HSERO_RS20555	0.55	+0.6
4,714,396	-		HSERO_RS20555	0.85	-0.9
4,714,411	+		HSERO_RS20555	0.87	-1.1
4,714,411	+		HSERO_RS20555	0.87	+0.3
4,714,425	+		HSERO_RS20555	0.88	+0.5
4,714,481	+				+0.1