Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20465

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,689,904	+		HSERO_RS20460	0.62	+0.1
4,689,915	+				+0.8
4,689,956	+		HSERO_RS20460	0.65	-0.9
4,689,978	-		HSERO_RS20460	0.66	+0.5
4,690,021	-		HSERO_RS20460	0.68	-0.4
4,690,034	+		HSERO_RS20460	0.68	-0.0
4,690,088	-		HSERO_RS20460	0.71	-2.7
4,690,150	+		HSERO_RS20460	0.74	+0.0
4,690,248	-		HSERO_RS20460	0.78	-0.2
4,690,253	+		HSERO_RS20460	0.78	+1.7
4,690,259	-		HSERO_RS20460	0.79	-0.0
4,690,264	+		HSERO_RS20460	0.79	+0.4
4,690,290	+		HSERO_RS20460	0.80	-0.2
4,690,290	+		HSERO_RS20460	0.80	+0.1
4,690,309	+		HSERO_RS20460	0.81	+0.3
4,690,319	+		HSERO_RS20460	0.82	+0.2
4,690,325	-				-0.7
4,690,476	-		HSERO_RS20460	0.89	-2.8
4,690,499	+		HSERO_RS20460	0.90	+0.5
4,690,499	+		HSERO_RS20460	0.90	-0.3
4,690,499	+		HSERO_RS20460	0.90	-0.1
4,690,499	+		HSERO_RS20460	0.90	-0.0
4,690,499	+		HSERO_RS20460	0.90	-0.8
4,690,507	-				-0.3
4,690,525	+				-0.3
4,690,553	-				+2.3
4,690,553	-				+1.1
4,690,558	-				-0.4
4,690,577	-				+1.0
4,690,626	-				-0.4
4,690,665	-				-0.0
4,690,817	+				+0.7
4,690,820	-				+0.5
4,690,822	+				+0.5
4,690,837	+				+1.5
4,690,858	-				+0.5
4,690,948	-				-1.3
4,690,953	-				+0.3
4,691,062	+		HSERO_RS20465	0.21	-0.1
4,691,062	+		HSERO_RS20465	0.21	-0.4
4,691,063	-		HSERO_RS20465	0.21	+0.2
4,691,070	-		HSERO_RS20465	0.22	-0.4
4,691,078	+		HSERO_RS20465	0.23	-0.3
4,691,135	-		HSERO_RS20465	0.28	+0.0
4,691,145	-		HSERO_RS20465	0.29	-0.1
4,691,145	-		HSERO_RS20465	0.29	+0.1
4,691,158	+		HSERO_RS20465	0.31	+0.8
4,691,160	-		HSERO_RS20465	0.31	-0.0
4,691,177	-		HSERO_RS20465	0.33	-0.2
4,691,194	+		HSERO_RS20465	0.35	-0.7
4,691,202	-		HSERO_RS20465	0.35	+1.2
4,691,212	+		HSERO_RS20465	0.36	-0.0
4,691,220	-		HSERO_RS20465	0.37	-3.0
4,691,220	-		HSERO_RS20465	0.37	+0.1
4,691,220	-		HSERO_RS20465	0.37	+0.2
4,691,220	-		HSERO_RS20465	0.37	-0.0
4,691,231	+		HSERO_RS20465	0.38	-0.7
4,691,300	+		HSERO_RS20465	0.46	+4.1
4,691,304	+		HSERO_RS20465	0.46	+0.8
4,691,383	-		HSERO_RS20465	0.54	-1.3
4,691,417	+		HSERO_RS20465	0.58	+0.2
4,691,424	+				-1.2
4,691,459	-		HSERO_RS20465	0.62	+1.5
4,691,503	+		HSERO_RS20465	0.67	-0.9
4,691,511	-		HSERO_RS20465	0.68	+0.7
4,691,579	-		HSERO_RS20465	0.75	-0.9
4,691,638	+		HSERO_RS20465	0.81	-0.1
4,691,638	+		HSERO_RS20465	0.81	-0.4
4,691,655	+		HSERO_RS20465	0.83	+0.6
4,691,772	+				-1.2
4,691,780	-				-1.0
4,691,780	-				-0.0
4,691,780	-				+1.2
4,691,791	+				-0.7
4,691,796	+				+0.5
4,691,876	-				-0.9
4,691,933	-				+0.5
4,691,934	-				+0.2
4,691,987	+				-0.6
4,692,020	+				-0.4
4,692,087	-		HSERO_RS20470	0.12	-0.0
4,692,095	+		HSERO_RS20470	0.13	+0.9
4,692,193	+		HSERO_RS20470	0.19	-0.4
4,692,227	+		HSERO_RS20470	0.22	+0.1
4,692,230	-		HSERO_RS20470	0.22	-1.6
4,692,240	+		HSERO_RS20470	0.23	+0.4
4,692,240	+		HSERO_RS20470	0.23	-2.6
4,692,240	+		HSERO_RS20470	0.23	-0.1
4,692,242	+		HSERO_RS20470	0.23	-1.6
4,692,248	-		HSERO_RS20470	0.23	+0.5
4,692,248	-		HSERO_RS20470	0.23	-1.7
4,692,248	-		HSERO_RS20470	0.23	-0.0
4,692,248	-		HSERO_RS20470	0.23	+0.3
4,692,325	-		HSERO_RS20470	0.29	-0.1
4,692,366	+		HSERO_RS20470	0.32	-1.4
4,692,401	-		HSERO_RS20470	0.34	-0.4
4,692,407	+		HSERO_RS20470	0.34	+0.2
4,692,415	-		HSERO_RS20470	0.35	-2.4
4,692,439	-		HSERO_RS20470	0.37	-0.2
4,692,478	+		HSERO_RS20470	0.39	+1.2
4,692,486	-		HSERO_RS20470	0.40	+0.1
4,692,486	-		HSERO_RS20470	0.40	-2.0
4,692,509	-		HSERO_RS20470	0.41	+0.4
4,692,534	+		HSERO_RS20470	0.43	-0.7
4,692,548	+		HSERO_RS20470	0.44	-0.5
4,692,603	+		HSERO_RS20470	0.48	-1.8
4,692,611	-		HSERO_RS20470	0.49	-0.4
4,692,613	+		HSERO_RS20470	0.49	-0.0
4,692,636	+		HSERO_RS20470	0.50	-0.6
4,692,644	+		HSERO_RS20470	0.51	-2.4
4,692,644	+		HSERO_RS20470	0.51	+0.0
4,692,644	+		HSERO_RS20470	0.51	+0.6
4,692,644	+		HSERO_RS20470	0.51	-0.2
4,692,644	+		HSERO_RS20470	0.51	-0.5
4,692,649	-		HSERO_RS20470	0.51	-2.0
4,692,649	-		HSERO_RS20470	0.51	+0.5
4,692,652	-		HSERO_RS20470	0.51	+0.1
4,692,652	-		HSERO_RS20470	0.51	+0.3
4,692,652	-		HSERO_RS20470	0.51	+0.1
4,692,652	-		HSERO_RS20470	0.51	+0.8
4,692,652	-		HSERO_RS20470	0.51	-0.1
4,692,652	-		HSERO_RS20470	0.51	+0.2
4,692,652	-		HSERO_RS20470	0.51	+0.2
4,692,684	-		HSERO_RS20470	0.54	-0.2
4,692,696	+		HSERO_RS20470	0.54	+0.1
4,692,696	+		HSERO_RS20470	0.54	+0.4
4,692,696	+		HSERO_RS20470	0.54	-0.3
4,692,696	-		HSERO_RS20470	0.54	-0.5
4,692,698	+		HSERO_RS20470	0.55	-0.2
4,692,708	+		HSERO_RS20470	0.55	-1.3
4,692,708	+		HSERO_RS20470	0.55	+0.1
4,692,708	+		HSERO_RS20470	0.55	+0.3
4,692,708	+		HSERO_RS20470	0.55	+0.5
4,692,708	+		HSERO_RS20470	0.55	+0.1
4,692,716	-		HSERO_RS20470	0.56	-0.1
4,692,716	-		HSERO_RS20470	0.56	+1.3
4,692,716	-		HSERO_RS20470	0.56	+0.2
4,692,716	-		HSERO_RS20470	0.56	+0.1
4,692,716	-				+1.1
4,692,716	-		HSERO_RS20470	0.56	-0.6
4,692,716	-		HSERO_RS20470	0.56	+0.7
4,692,716	-		HSERO_RS20470	0.56	-2.5
4,692,716	-		HSERO_RS20470	0.56	+0.8
4,692,800	+		HSERO_RS20470	0.62	-0.9