Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20160

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,629,050	+				+1.6
4,629,050	+				+0.5
4,629,063	-		HSERO_RS20155	0.11	-0.9
4,629,109	+		HSERO_RS20155	0.15	-0.4
4,629,140	+		HSERO_RS20155	0.18	-1.7
4,629,320	-		HSERO_RS20155	0.34	-0.0
4,629,345	-		HSERO_RS20155	0.36	-0.7
4,629,391	+		HSERO_RS20155	0.41	+0.2
4,629,410	+		HSERO_RS20155	0.42	-1.1
4,629,501	+		HSERO_RS20155	0.51	+0.1
4,629,601	-		HSERO_RS20155	0.60	-0.7
4,629,767	+		HSERO_RS20155	0.75	-1.5
4,629,800	+		HSERO_RS20155	0.78	-0.1
4,629,802	+		HSERO_RS20155	0.78	-0.6
4,630,009	+				+0.3
4,630,048	-				-0.6
4,630,117	-				-1.1
4,630,164	-				-1.5
4,630,415	-		HSERO_RS20160	0.22	-0.4
4,630,452	-		HSERO_RS20160	0.24	+0.8
4,630,491	-		HSERO_RS20160	0.27	+0.0
4,630,511	-		HSERO_RS20160	0.28	+0.5
4,630,576	-		HSERO_RS20160	0.31	-1.1
4,630,816	+		HSERO_RS20160	0.44	+0.7
4,630,824	-		HSERO_RS20160	0.45	+0.1
4,630,831	+		HSERO_RS20160	0.45	-0.5
4,630,928	+		HSERO_RS20160	0.50	+0.7
4,630,989	-		HSERO_RS20160	0.54	-1.9
4,631,093	-		HSERO_RS20160	0.59	+0.9
4,631,152	-		HSERO_RS20160	0.62	+0.3
4,631,156	+		HSERO_RS20160	0.63	-0.5
4,631,260	-		HSERO_RS20160	0.68	-0.1
4,631,306	-		HSERO_RS20160	0.71	-0.9
4,631,431	+		HSERO_RS20160	0.78	-0.7
4,631,480	+		HSERO_RS20160	0.80	-1.5
4,631,523	+		HSERO_RS20160	0.83	-2.0
4,631,607	+		HSERO_RS20160	0.87	-0.9
4,631,678	-				+0.6
4,631,726	-				+0.9
4,631,777	+				-1.2
4,631,910	-		HSERO_RS20165	0.13	-0.1
4,631,939	+		HSERO_RS20165	0.19	+0.2
4,632,040	-		HSERO_RS20165	0.40	+0.7
4,632,067	+		HSERO_RS20165	0.45	-0.3
4,632,084	+		HSERO_RS20165	0.49	-0.3
4,632,123	+		HSERO_RS20165	0.57	+0.4
4,632,131	-		HSERO_RS20165	0.58	-1.8
4,632,131	-		HSERO_RS20165	0.58	+0.8
4,632,186	-		HSERO_RS20165	0.70	-1.7
4,632,301	-				+0.0
4,632,301	-				-0.3
4,632,301	-				+0.3
4,632,429	+				-0.4
4,632,432	+				+0.4
4,632,454	-				-0.2
4,632,461	-				+0.1
4,632,486	-				+0.2
4,632,556	+		HSERO_RS20170	0.21	+1.3
4,632,612	+		HSERO_RS20170	0.32	-1.0
4,632,612	-		HSERO_RS20170	0.32	+2.1
4,632,624	+		HSERO_RS20170	0.34	-0.0
4,632,713	+		HSERO_RS20170	0.52	-0.5
4,632,793	+		HSERO_RS20170	0.69	-0.1