Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19465 and HSERO_RS19470 are separated by 96 nucleotides HSERO_RS19470 and HSERO_RS19475 overlap by 1 nucleotides HSERO_RS19475 and HSERO_RS19480 are separated by 237 nucleotides
HSERO_RS19465: HSERO_RS19465 - major facilitator transporter, at 4,459,972 to 4,461,453
_RS19465
HSERO_RS19470: HSERO_RS19470 - ubiquinone biosynthesis protein UbiB, at 4,461,550 to 4,463,124
_RS19470
HSERO_RS19475: HSERO_RS19475 - sterol-binding protein, at 4,463,124 to 4,463,690
_RS19475
HSERO_RS19480: HSERO_RS19480 - membrane protein, at 4,463,928 to 4,464,881
_RS19480
Position (kb) 4461
4462
4463
4464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4460.596 kb on + strand, within HSERO_RS19465 at 4460.697 kb on - strand, within HSERO_RS19465 at 4460.721 kb on + strand, within HSERO_RS19465 at 4460.782 kb on - strand, within HSERO_RS19465 at 4460.807 kb on - strand, within HSERO_RS19465 at 4460.855 kb on + strand, within HSERO_RS19465 at 4461.016 kb on + strand, within HSERO_RS19465 at 4461.024 kb on - strand, within HSERO_RS19465 at 4461.081 kb on - strand, within HSERO_RS19465 at 4461.106 kb on + strand, within HSERO_RS19465 at 4461.135 kb on + strand, within HSERO_RS19465 at 4461.143 kb on - strand, within HSERO_RS19465 at 4461.143 kb on - strand, within HSERO_RS19465 at 4461.169 kb on + strand, within HSERO_RS19465 at 4461.177 kb on - strand, within HSERO_RS19465 at 4461.182 kb on + strand, within HSERO_RS19465 at 4461.399 kb on + strand at 4463.855 kb on - strand at 4463.874 kb on + strand at 4463.887 kb on - strand at 4463.921 kb on - strand at 4463.986 kb on - strand at 4464.039 kb on - strand, within HSERO_RS19480 at 4464.039 kb on - strand, within HSERO_RS19480
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 4,460,596 + HSERO_RS19465 0.42 +0.4 4,460,697 - HSERO_RS19465 0.49 -2.1 4,460,721 + HSERO_RS19465 0.51 -0.5 4,460,782 - HSERO_RS19465 0.55 +0.8 4,460,807 - HSERO_RS19465 0.56 +0.6 4,460,855 + HSERO_RS19465 0.60 -1.6 4,461,016 + HSERO_RS19465 0.70 -1.6 4,461,024 - HSERO_RS19465 0.71 +0.2 4,461,081 - HSERO_RS19465 0.75 -3.2 4,461,106 + HSERO_RS19465 0.77 +0.7 4,461,135 + HSERO_RS19465 0.78 -0.4 4,461,143 - HSERO_RS19465 0.79 -0.9 4,461,143 - HSERO_RS19465 0.79 -1.4 4,461,169 + HSERO_RS19465 0.81 -0.1 4,461,177 - HSERO_RS19465 0.81 -0.9 4,461,182 + HSERO_RS19465 0.82 -1.4 4,461,399 + -1.0 4,463,855 - +0.5 4,463,874 + -1.9 4,463,887 - -0.5 4,463,921 - +0.5 4,463,986 - -0.9 4,464,039 - HSERO_RS19480 0.12 -0.8 4,464,039 - HSERO_RS19480 0.12 -4.1
Or see this region's nucleotide sequence