Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19305

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,427,604	-				+1.1
4,427,669	-		HSERO_RS19300	0.19	-2.7
4,427,715	-		HSERO_RS19300	0.27	+0.1
4,427,717	+		HSERO_RS19300	0.27	+1.4
4,427,777	+		HSERO_RS19300	0.37	-1.1
4,427,959	+		HSERO_RS19300	0.66	-1.2
4,427,972	-		HSERO_RS19300	0.68	-0.3
4,427,985	+		HSERO_RS19300	0.70	+0.2
4,427,996	+		HSERO_RS19300	0.72	+0.9
4,428,184	+				-0.5
4,428,184	+				+0.7
4,428,244	-				+0.6
4,428,326	+				+0.2
4,428,348	+				-0.7
4,428,354	+				+1.6
4,428,362	-				+0.4
4,428,589	+		HSERO_RS19305	0.13	-0.0
4,428,817	-		HSERO_RS19305	0.62	+0.1
4,428,864	-		HSERO_RS19305	0.72	-0.5
4,428,940	-		HSERO_RS19305	0.89	-0.2
4,429,067	+				+0.5
4,429,074	+				+0.2
4,429,246	-				-2.2
4,429,251	-				+2.1
4,429,251	-				+3.1
4,429,258	-				-0.5
4,429,261	-				+0.2
4,429,261	-				-0.4
4,429,261	-				+0.6
4,429,339	+		HSERO_RS19310	0.13	+0.4
4,429,441	-		HSERO_RS19310	0.42	-0.1
4,429,491	-		HSERO_RS19310	0.57	+0.5
4,429,641	+				-0.2
4,429,791	-				-2.4
4,429,974	+		HSERO_RS19315	0.28	-0.7