Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18560 and HSERO_RS18565 are separated by 118 nucleotides HSERO_RS18565 and HSERO_RS18570 are separated by 304 nucleotides
HSERO_RS18560: HSERO_RS18560 - hypothetical protein, at 4,257,011 to 4,257,769
_RS18560
HSERO_RS18565: HSERO_RS18565 - chemotaxis protein, at 4,257,888 to 4,259,525
_RS18565
HSERO_RS18570: HSERO_RS18570 - maleylacetate reductase, at 4,259,830 to 4,260,900
_RS18570
Position (kb) 4257
4258
4259
4260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4257.105 kb on - strand, within HSERO_RS18560 at 4257.318 kb on - strand, within HSERO_RS18560 at 4257.396 kb on + strand, within HSERO_RS18560 at 4257.545 kb on + strand, within HSERO_RS18560 at 4257.651 kb on - strand, within HSERO_RS18560 at 4257.728 kb on - strand at 4257.733 kb on - strand at 4257.782 kb on + strand at 4258.229 kb on - strand, within HSERO_RS18565 at 4258.486 kb on + strand, within HSERO_RS18565 at 4258.499 kb on + strand, within HSERO_RS18565 at 4258.629 kb on - strand, within HSERO_RS18565 at 4258.793 kb on - strand, within HSERO_RS18565 at 4259.010 kb on - strand, within HSERO_RS18565 at 4259.231 kb on + strand, within HSERO_RS18565 at 4259.244 kb on - strand, within HSERO_RS18565 at 4259.246 kb on + strand, within HSERO_RS18565 at 4259.318 kb on + strand, within HSERO_RS18565 at 4259.508 kb on - strand at 4259.521 kb on + strand at 4259.528 kb on - strand at 4259.667 kb on - strand at 4259.801 kb on + strand at 4259.817 kb on + strand at 4259.817 kb on + strand at 4259.823 kb on + strand at 4259.825 kb on - strand at 4259.974 kb on + strand, within HSERO_RS18570 at 4259.977 kb on - strand, within HSERO_RS18570 at 4260.023 kb on - strand, within HSERO_RS18570 at 4260.103 kb on - strand, within HSERO_RS18570 at 4260.106 kb on - strand, within HSERO_RS18570 at 4260.120 kb on + strand, within HSERO_RS18570 at 4260.168 kb on + strand, within HSERO_RS18570 at 4260.168 kb on + strand, within HSERO_RS18570 at 4260.176 kb on - strand, within HSERO_RS18570 at 4260.208 kb on + strand, within HSERO_RS18570 at 4260.208 kb on + strand, within HSERO_RS18570 at 4260.296 kb on + strand, within HSERO_RS18570 at 4260.389 kb on - strand, within HSERO_RS18570 at 4260.426 kb on + strand, within HSERO_RS18570 at 4260.441 kb on - strand, within HSERO_RS18570 at 4260.507 kb on + strand, within HSERO_RS18570 at 4260.521 kb on - strand, within HSERO_RS18570
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 4,257,105 - HSERO_RS18560 0.12 +0.2 4,257,318 - HSERO_RS18560 0.40 +0.6 4,257,396 + HSERO_RS18560 0.51 +0.3 4,257,545 + HSERO_RS18560 0.70 -0.9 4,257,651 - HSERO_RS18560 0.84 +0.1 4,257,728 - +1.1 4,257,733 - -0.6 4,257,782 + +0.5 4,258,229 - HSERO_RS18565 0.21 -0.2 4,258,486 + HSERO_RS18565 0.37 -2.5 4,258,499 + HSERO_RS18565 0.37 -2.8 4,258,629 - HSERO_RS18565 0.45 +0.8 4,258,793 - HSERO_RS18565 0.55 +0.7 4,259,010 - HSERO_RS18565 0.68 -2.4 4,259,231 + HSERO_RS18565 0.82 +1.8 4,259,244 - HSERO_RS18565 0.83 -1.5 4,259,246 + HSERO_RS18565 0.83 -1.2 4,259,318 + HSERO_RS18565 0.87 +0.5 4,259,508 - +0.3 4,259,521 + +0.9 4,259,528 - +0.3 4,259,667 - +1.5 4,259,801 + -1.1 4,259,817 + -0.4 4,259,817 + +0.4 4,259,823 + -0.2 4,259,825 - +0.9 4,259,974 + HSERO_RS18570 0.13 -0.4 4,259,977 - HSERO_RS18570 0.14 +0.4 4,260,023 - HSERO_RS18570 0.18 -1.3 4,260,103 - HSERO_RS18570 0.25 +1.4 4,260,106 - HSERO_RS18570 0.26 +0.4 4,260,120 + HSERO_RS18570 0.27 +0.6 4,260,168 + HSERO_RS18570 0.32 -0.4 4,260,168 + HSERO_RS18570 0.32 -0.1 4,260,176 - HSERO_RS18570 0.32 +0.5 4,260,208 + HSERO_RS18570 0.35 +0.1 4,260,208 + HSERO_RS18570 0.35 -1.3 4,260,296 + HSERO_RS18570 0.44 -0.0 4,260,389 - HSERO_RS18570 0.52 +0.4 4,260,426 + HSERO_RS18570 0.56 -1.2 4,260,441 - HSERO_RS18570 0.57 -1.7 4,260,507 + HSERO_RS18570 0.63 +1.2 4,260,521 - HSERO_RS18570 0.65 -1.5
Or see this region's nucleotide sequence