Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18050

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,148,246	+				+0.1
4,148,254	+				-0.5
4,148,254	+				-2.0
4,148,381	-				+0.4
4,148,383	+				-2.4
4,148,404	+				-0.4
4,148,406	+				-0.1
4,148,412	-				-0.9
4,148,414	-				+0.0
4,148,498	+		HSERO_RS18045	0.17	+2.0
4,148,717	+				+0.9
4,148,741	+				-0.3
4,148,923	-				+0.0
4,148,962	-				-2.2
4,149,006	+		HSERO_RS18050	0.12	-3.2
4,149,035	-		HSERO_RS18050	0.16	+0.7
4,149,158	-		HSERO_RS18050	0.32	-0.1
4,149,199	+		HSERO_RS18050	0.38	+1.3
4,149,380	+		HSERO_RS18050	0.62	+1.1
4,149,380	+		HSERO_RS18050	0.62	-0.3
4,149,653	+				+0.2
4,149,686	+				-0.1
4,149,703	+				+0.5
4,149,703	+				-0.5
4,149,711	-				+1.1
4,149,711	-				+0.5
4,149,713	+				+2.3
4,149,721	-				+0.4
4,149,918	+				+0.8
4,149,928	+				+1.1
4,149,965	+				-1.9
4,150,038	+				-0.1
4,150,046	-				+0.6
4,150,150	-				+0.6
4,150,158	-				-0.9
4,150,195	+				+1.5
4,150,219	+				-0.2
4,150,253	-				+0.7
4,150,489	-		HSERO_RS18055	0.29	+2.6
4,150,620	+		HSERO_RS18055	0.40	+1.0