Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17160

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,929,817	+		HSERO_RS17155	0.74	-1.7
3,929,896	+		HSERO_RS17155	0.79	+1.9
3,929,896	+		HSERO_RS17155	0.79	+0.0
3,930,268	-				-3.3
3,930,311	-				-0.2
3,930,380	+		HSERO_RS17160	0.35	-0.2
3,930,408	-		HSERO_RS17160	0.45	-1.2
3,930,527	-				+0.1
3,930,656	+				-0.2
3,930,721	+				+0.3
3,930,857	+		HSERO_RS17165	0.31	+0.2
3,930,857	+		HSERO_RS17165	0.31	+1.1
3,930,858	+		HSERO_RS17165	0.31	+1.8
3,930,863	+		HSERO_RS17165	0.32	+0.3
3,931,036	+		HSERO_RS17165	0.59	+0.9
3,931,191	+		HSERO_RS17165	0.83	-0.9
3,931,191	+		HSERO_RS17165	0.83	-0.7
3,931,199	-		HSERO_RS17165	0.85	+0.4
3,931,199	-		HSERO_RS17165	0.85	+1.1
3,931,199	-		HSERO_RS17165	0.85	-0.1
3,931,199	-		HSERO_RS17165	0.85	+1.2
3,931,424	-				-0.2
3,931,515	+		HSERO_RS17170	0.14	-1.2
3,931,522	+		HSERO_RS17170	0.14	+0.1