Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16375

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,748,751	+				-0.6
3,748,892	+				-1.1
3,748,913	-				+0.1
3,748,930	-				+1.4
3,749,020	-				+0.1
3,749,314	-		HSERO_RS16370	0.78	-2.0
3,749,557	-				-0.9
3,749,633	-				-3.2
3,749,983	+		HSERO_RS16375	0.32	-1.4
3,750,055	-		HSERO_RS16375	0.38	+1.0
3,750,120	+		HSERO_RS16375	0.43	-0.2
3,750,232	+		HSERO_RS16375	0.53	-1.6
3,750,243	+		HSERO_RS16375	0.54	-1.2
3,750,366	-		HSERO_RS16375	0.65	-1.5
3,750,515	+		HSERO_RS16375	0.77	-0.6
3,750,573	-		HSERO_RS16375	0.82	-0.4
3,750,622	+		HSERO_RS16375	0.87	-0.1
3,750,648	+		HSERO_RS16375	0.89	+0.5
3,750,651	-				-2.0
3,750,651	-		HSERO_RS16375	0.89	-1.3
3,750,651	-		HSERO_RS16375	0.89	+1.3
3,750,656	-		HSERO_RS16375	0.89	-0.7
3,750,676	+				-0.1
3,750,677	-				-1.9
3,750,677	-				-1.0
3,750,684	-				-0.6
3,750,694	+				-0.2
3,750,698	-				-0.4
3,750,701	+				-2.0
3,750,716	+				-2.1
3,750,716	+				-1.1
3,750,716	+				+0.0
3,750,724	-				+0.2
3,750,726	+				-0.3
3,750,726	+				+0.4
3,750,726	+				-2.3
3,750,726	+				-1.2
3,750,729	-				+0.4
3,750,734	-				+0.5
3,750,734	-				+0.0
3,750,734	-				-0.3
3,750,747	+				-0.1
3,750,747	+				-1.1
3,750,747	+				+0.2
3,750,747	+				-2.0
3,750,747	+				+0.1
3,750,747	+				+0.8
3,750,747	+				-0.6
3,750,747	+				-2.5
3,750,755	-				+0.8
3,750,755	-				-1.1
3,750,783	+				-0.1
3,750,812	-				+0.3
3,750,813	-				-0.3
3,750,813	-				+0.3
3,750,854	+				+1.0
3,750,909	+				-1.0
3,750,966	+				-0.6
3,751,009	+				-0.3
3,751,022	+				-1.9
3,751,022	+				-0.8
3,751,022	+				-0.3
3,751,022	+				+0.1
3,751,022	+				+0.7
3,751,022	+				+0.1
3,751,022	+				-0.0
3,751,022	+				-0.5
3,751,022	+				+0.3
3,751,022	+				+0.2
3,751,030	+				+0.2
3,751,030	+				-0.6
3,751,030	+				+0.1
3,751,030	+				+0.5
3,751,030	+				-0.3
3,751,030	+				-0.5
3,751,030	+				-0.1
3,751,030	+				+0.3
3,751,030	+				+0.1
3,751,030	+				+0.2
3,751,030	+				+2.5
3,751,030	+				-0.1
3,751,030	+				-0.2
3,751,030	-				-0.1
3,751,030	-				-0.1
3,751,030	-				-1.7
3,751,030	-				+0.3
3,751,031	-				-0.0
3,751,037	-				+0.3
3,751,037	-				-0.4
3,751,037	-				-2.5
3,751,038	-				-0.1
3,751,038	-				+0.4
3,751,038	-				+0.1
3,751,038	-				+0.3
3,751,038	-				-0.5
3,751,038	-				-0.5
3,751,038	-				-0.0
3,751,043	-				+0.4
3,751,050	+				+0.4
3,751,142	+				+0.7
3,751,154	+				-0.8
3,751,159	+				-1.1
3,751,161	-				-0.4
3,751,463	+		HSERO_RS16380	0.52	+2.0
3,751,471	-		HSERO_RS16380	0.53	+0.3
3,751,481	+		HSERO_RS16380	0.55	-1.1