Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15875

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,623,536	+				+0.8
3,623,544	-				+0.1
3,623,565	+				+0.2
3,623,565	+				-1.7
3,623,573	-				-2.1
3,623,646	-		HSERO_RS15870	0.17	-0.7
3,623,671	-		HSERO_RS15870	0.20	-0.8
3,623,771	-		HSERO_RS15870	0.30	-0.4
3,623,941	-		HSERO_RS15870	0.48	-1.2
3,623,974	-		HSERO_RS15870	0.52	-3.0
3,624,026	+				-1.1
3,624,043	+		HSERO_RS15870	0.59	-1.8
3,624,215	-		HSERO_RS15870	0.78	-0.8
3,624,258	-		HSERO_RS15870	0.82	+0.4
3,624,421	-				-0.4
3,624,575	-		HSERO_RS15875	0.14	-0.5
3,624,830	+		HSERO_RS15875	0.42	-0.3
3,624,898	+		HSERO_RS15875	0.50	-1.7
3,624,942	-		HSERO_RS15875	0.55	-0.7
3,625,131	+		HSERO_RS15875	0.76	-0.4
3,625,185	-		HSERO_RS15875	0.82	-2.6
3,625,248	-		HSERO_RS15875	0.89	-1.9
3,625,378	-				-0.6
3,625,378	-				-1.1
3,625,431	+		HSERO_RS15880	0.11	-1.6
3,625,489	+		HSERO_RS15880	0.18	-0.1
3,625,537	+		HSERO_RS15880	0.24	+1.2
3,625,545	-		HSERO_RS15880	0.25	-1.7
3,625,583	-		HSERO_RS15880	0.29	-0.5
3,625,601	+		HSERO_RS15880	0.31	+1.8
3,625,679	-		HSERO_RS15880	0.40	+1.2
3,625,742	-		HSERO_RS15880	0.48	-0.2
3,625,770	-		HSERO_RS15880	0.51	+0.1
3,625,770	-		HSERO_RS15880	0.51	+0.2
3,625,890	-		HSERO_RS15880	0.65	+0.4
3,626,035	+		HSERO_RS15880	0.83	-1.8
3,626,035	+		HSERO_RS15880	0.83	-1.6
3,626,043	-		HSERO_RS15880	0.84	-1.0
3,626,118	+				+0.1
3,626,126	-				-0.2
3,626,275	-				+0.2