Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15855

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,620,880	-		HSERO_RS15850	0.90	-0.4
3,620,920	+				-3.0
3,621,016	-				-0.1
3,621,029	+				-0.1
3,621,030	+				+0.4
3,621,030	+				-1.1
3,621,084	+				+0.7
3,621,111	-				+1.4
3,621,114	+				-0.9
3,621,145	-				-0.6
3,621,405	-				-0.8
3,621,410	-				-0.6
3,621,698	+		HSERO_RS15855	0.54	-0.1
3,621,980	+				-0.0
3,621,988	-				-2.6
3,621,988	-				+0.6
3,622,021	-		HSERO_RS15860	0.11	-0.5
3,622,100	+		HSERO_RS15860	0.20	-0.3
3,622,108	-				+1.2
3,622,111	+		HSERO_RS15860	0.21	-3.8
3,622,131	+		HSERO_RS15860	0.23	+0.3
3,622,181	-		HSERO_RS15860	0.28	-0.1
3,622,186	+		HSERO_RS15860	0.29	+0.3
3,622,541	+		HSERO_RS15860	0.67	-0.6
3,622,620	+		HSERO_RS15860	0.75	+0.4