Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15845

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,617,306	-		HSERO_RS15840	0.60	-0.7
3,617,325	-		HSERO_RS15840	0.61	-0.2
3,617,397	+		HSERO_RS15840	0.64	-2.8
3,617,637	+		HSERO_RS15840	0.76	+0.8
3,617,644	-				-2.8
3,617,712	+		HSERO_RS15840	0.79	-0.4
3,617,716	+		HSERO_RS15840	0.80	-0.6
3,617,929	-		HSERO_RS15840	0.90	-0.2
3,618,178	+				+0.9
3,618,186	-				+0.8
3,619,397	-		HSERO_RS15850	0.17	+0.0
3,619,521	+		HSERO_RS15850	0.23	+0.3
3,619,660	+		HSERO_RS15850	0.30	+0.2
3,619,890	+		HSERO_RS15850	0.41	+1.0