Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13005

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,963,119	-		HSERO_RS12995	0.61	-1.6
2,963,259	-		HSERO_RS12995	0.79	+1.8
2,963,325	+		HSERO_RS12995	0.87	-0.4
2,963,480	-				-0.2
2,963,795	+		HSERO_RS13000	0.57	+0.4
2,963,799	-		HSERO_RS13000	0.57	-1.4
2,963,814	+		HSERO_RS13000	0.60	+0.5
2,963,847	-		HSERO_RS13000	0.66	+0.4
2,963,851	-		HSERO_RS13000	0.67	+0.6
2,964,614	-		HSERO_RS13005	0.41	+1.3
2,964,816	+		HSERO_RS13005	0.56	+0.6
2,964,927	+		HSERO_RS13005	0.64	-2.1
2,964,934	-		HSERO_RS13005	0.65	+3.9
2,964,947	+		HSERO_RS13005	0.66	+0.7
2,965,010	-		HSERO_RS13005	0.71	-0.5
2,965,168	+		HSERO_RS13005	0.83	+0.3
2,965,575	-				-0.8
2,965,796	-				-1.6
2,965,853	+				+0.6
2,965,855	+		HSERO_RS13010	0.13	-0.1
2,966,048	-		HSERO_RS13010	0.22	-0.3
2,966,071	+		HSERO_RS13010	0.23	+1.1
2,966,079	-		HSERO_RS13010	0.24	-2.5
2,966,113	-		HSERO_RS13010	0.25	-0.6
2,966,149	+		HSERO_RS13010	0.27	-0.3
2,966,190	+		HSERO_RS13010	0.29	-1.1