Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12970

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,956,172	+		HSERO_RS12960	0.78	+1.0
2,956,180	-		HSERO_RS12960	0.80	-0.1
2,956,400	+		HSERO_RS12965	0.16	-0.2
2,956,402	+		HSERO_RS12965	0.16	-0.8
2,956,556	-		HSERO_RS12965	0.35	-1.3
2,956,595	+		HSERO_RS12965	0.40	+4.5
2,957,074	+				-0.2
2,957,171	-				-0.3
2,957,250	-		HSERO_RS12970	0.16	-0.6
2,957,289	+		HSERO_RS12970	0.21	+1.6
2,957,330	+		HSERO_RS12970	0.26	-0.8
2,957,338	-		HSERO_RS12970	0.27	-0.5
2,957,539	+		HSERO_RS12970	0.50	+0.4
2,957,680	+		HSERO_RS12970	0.67	+0.2
2,957,756	-		HSERO_RS12970	0.76	+1.3
2,958,078	+				-0.2
2,958,165	+				-3.1
2,958,168	-				-0.5
2,958,476	-		HSERO_RS12975	0.16	+0.2