Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12760

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,907,160	+		HSERO_RS12755	0.86	-0.1
2,907,333	+				+0.3
2,907,341	-				+0.6
2,907,803	-				+0.8
2,907,861	+				-0.1
2,907,896	-				+0.2
2,907,957	-				+0.3
2,908,061	+				-0.2
2,908,115	+				+0.5
2,908,491	-		HSERO_RS12760	0.38	-0.3
2,908,514	+		HSERO_RS12760	0.41	-1.3
2,908,568	+		HSERO_RS12760	0.47	-2.0
2,909,001	+				+0.3
2,909,034	+				+2.6
2,909,159	+		HSERO_RS12765	0.10	-1.5
2,909,159	+		HSERO_RS12765	0.10	-0.2
2,909,167	-		HSERO_RS12765	0.11	-0.5
2,909,322	-		HSERO_RS12765	0.28	-1.8
2,909,404	-		HSERO_RS12765	0.37	+0.1
2,909,904	+				+0.2
2,909,960	+				-0.6