Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12450

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,828,233	+		HSERO_RS12445	0.54	-0.6
2,828,362	-		HSERO_RS12445	0.64	+1.4
2,828,371	+		HSERO_RS12445	0.65	+0.2
2,828,371	+		HSERO_RS12445	0.65	-0.0
2,828,379	-		HSERO_RS12445	0.65	-2.0
2,828,494	+		HSERO_RS12445	0.74	-0.7
2,828,502	-		HSERO_RS12445	0.75	-0.5
2,828,502	-				-0.8
2,828,563	+		HSERO_RS12445	0.80	-0.4
2,828,581	-		HSERO_RS12445	0.81	-0.2
2,828,604	-		HSERO_RS12445	0.83	-2.9
2,828,851	-				+0.4
2,829,031	-				+1.0
2,829,575	+		HSERO_RS12450	0.13	-0.5
2,829,718	-		HSERO_RS12450	0.17	+0.0
2,829,993	-		HSERO_RS12450	0.24	+0.3
2,830,096	+		HSERO_RS12450	0.26	-0.2
2,830,104	-				-1.0
2,830,104	-		HSERO_RS12450	0.27	-1.3
2,830,156	+		HSERO_RS12450	0.28	-0.8
2,830,156	+		HSERO_RS12450	0.28	-0.6
2,831,034	-				+0.8
2,831,378	-		HSERO_RS12450	0.60	-0.1
2,831,524	+		HSERO_RS12450	0.64	-0.4
2,831,694	+		HSERO_RS12450	0.69	-0.5
2,831,694	+		HSERO_RS12450	0.69	-1.0
2,832,169	+		HSERO_RS12450	0.81	+0.1
2,832,174	+		HSERO_RS12450	0.81	-0.6
2,832,177	-		HSERO_RS12450	0.81	+0.1
2,832,177	-		HSERO_RS12450	0.81	-2.0
2,832,177	-		HSERO_RS12450	0.81	+1.0
2,832,234	+		HSERO_RS12450	0.83	+1.4
2,832,255	-		HSERO_RS12450	0.83	-1.3
2,832,292	-		HSERO_RS12450	0.84	-1.0
2,832,390	+		HSERO_RS12450	0.87	+0.4
2,832,398	-				+1.8
2,832,458	-		HSERO_RS12450	0.89	+0.3
2,832,916	+				-1.2
2,832,924	-				+0.6
2,832,979	-				-1.5
2,833,000	-				-1.1
2,833,064	+				+1.7
2,833,140	-				+0.7
2,833,206	+				-1.4
2,833,272	+		HSERO_RS12455	0.12	+2.5
2,833,432	+		HSERO_RS12455	0.55	-2.1
2,833,576	+				+0.5
2,833,740	+				-0.3
2,833,857	+				+0.3