Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12440

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,825,849	+		HSERO_RS12430	0.79	-1.0
2,826,137	+		HSERO_RS12435	0.23	+1.0
2,826,260	+		HSERO_RS12435	0.52	-2.0
2,826,309	-		HSERO_RS12435	0.64	+0.3
2,826,361	+		HSERO_RS12435	0.76	-1.2
2,826,845	-		HSERO_RS12440	0.16	+2.2
2,826,892	-		HSERO_RS12440	0.22	+0.2
2,826,978	+		HSERO_RS12440	0.32	-0.7
2,827,470	-				+0.6
2,827,526	-				-1.7
2,827,545	+				-1.7
2,827,563	+				+0.1
2,827,922	+		HSERO_RS12445	0.29	-0.2
2,828,233	+		HSERO_RS12445	0.54	-0.6
2,828,362	-		HSERO_RS12445	0.64	+1.4
2,828,371	+		HSERO_RS12445	0.65	+0.2
2,828,371	+		HSERO_RS12445	0.65	-0.0
2,828,379	-		HSERO_RS12445	0.65	-2.0
2,828,494	+		HSERO_RS12445	0.74	-0.7
2,828,502	-		HSERO_RS12445	0.75	-0.5
2,828,502	-				-0.8