Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11740

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,678,068	+				-0.8
2,678,138	+				+0.1
2,678,146	-				-2.5
2,678,146	-				+0.0
2,678,236	+				+0.4
2,678,305	-				-0.6
2,678,659	-				-0.2
2,678,757	-				-2.5
2,678,905	+				-1.1
2,678,928	+				-0.4
2,678,953	-				-0.1
2,679,135	-				-1.3
2,679,135	-				+1.7
2,679,209	-		HSERO_RS11740	0.17	+1.3
2,679,282	-		HSERO_RS11740	0.25	+0.1
2,679,289	+		HSERO_RS11740	0.26	-0.8
2,679,295	+		HSERO_RS11740	0.26	+0.3
2,679,419	+		HSERO_RS11740	0.39	-1.0
2,679,866	-		HSERO_RS11740	0.86	-0.7
2,679,908	+				+2.0
2,679,950	+				-0.5
2,679,961	+				+2.0
2,679,973	+				-0.7
2,679,978	+				+0.6
2,679,985	+				-1.3
2,680,047	+				-0.0
2,680,106	+				-0.7
2,680,223	-				+2.2
2,680,274	+				+1.4
2,680,373	-				-2.0
2,680,373	-		HSERO_RS11745	0.15	-0.3
2,680,378	-		HSERO_RS11745	0.15	-0.3
2,680,452	+		HSERO_RS11745	0.19	+1.6
2,680,474	+		HSERO_RS11745	0.20	+0.7
2,680,490	+		HSERO_RS11745	0.20	+1.4
2,680,622	+		HSERO_RS11745	0.27	-2.5
2,680,695	+		HSERO_RS11745	0.31	-0.7
2,680,711	-		HSERO_RS11745	0.32	-0.9
2,680,844	+		HSERO_RS11745	0.38	-1.3
2,680,851	+		HSERO_RS11745	0.39	-0.6
2,680,893	-		HSERO_RS11745	0.41	+0.0