Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10540

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,369,797	+				-2.2
2,369,811	+				-0.2
2,369,823	+				-0.4
2,369,841	-				+1.1
2,369,986	-		HSERO_RS10535	0.25	-1.0
2,370,046	+		HSERO_RS10535	0.31	-0.2
2,370,092	+		HSERO_RS10535	0.35	-0.8
2,370,121	+		HSERO_RS10535	0.38	-0.1
2,370,127	-		HSERO_RS10535	0.39	-0.1
2,370,129	-		HSERO_RS10535	0.39	-0.5
2,370,408	-		HSERO_RS10535	0.68	+0.1
2,370,454	-		HSERO_RS10535	0.72	+0.6
2,370,550	+		HSERO_RS10535	0.82	+1.1
2,370,550	+		HSERO_RS10535	0.82	+1.2
2,370,550	+		HSERO_RS10535	0.82	+0.2
2,370,719	+				-0.1
2,370,722	-				-0.6
2,371,005	-		HSERO_RS10540	0.69	-0.4
2,371,034	-		HSERO_RS10540	0.77	-0.3
2,371,067	+		HSERO_RS10540	0.86	-2.6
2,371,286	-				-2.2
2,371,286	-				-1.4
2,371,323	-				-1.0
2,371,407	-				+0.4
2,371,718	+				+1.1
2,371,718	+		HSERO_RS10545	0.19	-0.6
2,371,726	-		HSERO_RS10545	0.19	+0.0
2,371,793	+		HSERO_RS10545	0.22	-0.9
2,371,803	-		HSERO_RS10545	0.22	-2.9
2,371,884	-		HSERO_RS10545	0.25	-1.0
2,372,006	-		HSERO_RS10545	0.30	+0.4
2,372,097	-		HSERO_RS10545	0.34	-0.1