Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10045

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,271,927	-				+0.7
2,272,021	+				+1.5
2,272,056	+				-0.0
2,272,204	+				-1.5
2,272,204	+				+0.9
2,272,212	-				-1.3
2,272,227	-				-0.1
2,272,247	+				-0.2
2,272,507	+		HSERO_RS10040	0.39	-2.5
2,272,702	-				+0.3
2,272,731	+				+0.8
2,272,913	+				-1.3
2,272,935	+				+0.6
2,273,056	-		HSERO_RS10045	0.20	-0.1
2,273,056	-		HSERO_RS10045	0.20	-0.5
2,273,385	+		HSERO_RS10045	0.52	+0.1
2,273,417	-		HSERO_RS10045	0.55	-0.8
2,273,429	+		HSERO_RS10045	0.56	-2.4
2,273,578	+		HSERO_RS10045	0.71	-0.2
2,273,592	-		HSERO_RS10045	0.72	-0.9
2,273,592	-		HSERO_RS10045	0.72	-1.3
2,273,701	+		HSERO_RS10045	0.82	+0.3
2,273,842	+				-0.3
2,273,843	+				+0.0
2,274,798	-		HSERO_RS10050	0.81	+1.3