Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08520

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,940,385	-				+0.3
1,940,517	+				+0.0
1,940,606	-				+0.1
1,940,650	-				+0.4
1,940,817	-				+0.2
1,940,833	-				-0.1
1,940,833	-				+0.9
1,940,833	-				-0.9
1,940,833	-				-0.2
1,940,966	+				-1.5
1,940,966	+				-0.3
1,941,079	-				-1.3
1,941,250	+				-1.3
1,941,331	+		HSERO_RS08520	0.12	-0.3
1,941,552	+		HSERO_RS08520	0.29	-1.8
1,941,966	-		HSERO_RS08520	0.60	+0.1
1,941,994	+		HSERO_RS08520	0.62	+1.2
1,942,161	-		HSERO_RS08520	0.75	-0.0
1,942,280	+		HSERO_RS08520	0.83	-0.4
1,942,288	-		HSERO_RS08520	0.84	-1.0
1,942,288	-		HSERO_RS08520	0.84	+0.6
1,942,316	-		HSERO_RS08520	0.86	-2.4
1,942,640	+		HSERO_RS08525	0.12	+0.4
1,942,788	+		HSERO_RS08525	0.33	-0.5
1,942,788	+		HSERO_RS08525	0.33	-0.0
1,942,793	+		HSERO_RS08525	0.34	-0.1
1,942,855	-		HSERO_RS08525	0.42	+0.6
1,942,881	+		HSERO_RS08525	0.46	+0.9
1,943,118	-		HSERO_RS08525	0.80	-0.6
1,943,252	+				+0.3
1,943,265	-				-0.4
1,943,270	-				+0.3
1,943,307	+				-0.6
1,943,316	-				+0.0
1,943,379	-				-1.1