Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08505

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,935,274	-		HSERO_RS08500	0.66	-0.7
1,935,344	+		HSERO_RS08500	0.70	-0.1
1,935,628	+		HSERO_RS08500	0.85	-0.0
1,935,663	-		HSERO_RS08500	0.87	+0.5
1,935,663	-		HSERO_RS08500	0.87	+0.3
1,935,711	+		HSERO_RS08500	0.90	+0.2
1,935,729	-				+0.2
1,935,847	-				-0.6
1,935,910	-				-0.1
1,935,951	+				+0.8
1,936,032	+				-1.4
1,936,040	-				-0.5
1,936,094	-				-0.3
1,936,198	+				-0.7
1,936,375	-		HSERO_RS08505	0.11	-1.0
1,936,419	+		HSERO_RS08505	0.14	-0.3
1,936,425	-		HSERO_RS08505	0.14	+0.5
1,936,427	-		HSERO_RS08505	0.14	+0.2
1,936,463	-		HSERO_RS08505	0.17	+0.5
1,936,656	+		HSERO_RS08505	0.29	-0.3
1,936,816	-		HSERO_RS08505	0.39	+1.1
1,936,930	+		HSERO_RS08505	0.46	+1.5
1,936,930	+		HSERO_RS08505	0.46	+1.2
1,936,990	-		HSERO_RS08505	0.50	+0.8
1,937,011	+		HSERO_RS08505	0.51	+0.3
1,937,124	-		HSERO_RS08505	0.59	-0.7
1,937,139	-		HSERO_RS08505	0.60	+0.7
1,937,263	-		HSERO_RS08505	0.68	+1.8
1,937,315	+		HSERO_RS08505	0.71	-0.3
1,937,547	-		HSERO_RS08505	0.86	+0.4
1,937,617	-				+0.1
1,937,659	-				+0.1
1,937,775	-				-0.6
1,937,863	-				-0.2
1,937,863	-				-0.8
1,937,998	-		HSERO_RS08510	0.11	-0.4
1,938,108	+		HSERO_RS08510	0.17	+0.3
1,938,270	-		HSERO_RS08510	0.26	-1.9
1,938,370	-		HSERO_RS08510	0.32	-0.1
1,938,454	+		HSERO_RS08510	0.37	+0.8
1,938,557	+		HSERO_RS08510	0.43	+0.6