Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08205 and HSERO_RS08210 are separated by 30 nucleotides HSERO_RS08210 and HSERO_RS08215 are separated by 63 nucleotides HSERO_RS08215 and HSERO_RS08220 are separated by 61 nucleotides HSERO_RS08220 and HSERO_RS08225 are separated by 39 nucleotides
HSERO_RS08205: HSERO_RS08205 - sulfonate ABC transporter, at 1,872,650 to 1,873,489
_RS08205
HSERO_RS08210: HSERO_RS08210 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,873,520 to 1,874,353
_RS08210
HSERO_RS08215: HSERO_RS08215 - transporter, at 1,874,417 to 1,874,632
_RS08215
HSERO_RS08220: HSERO_RS08220 - diguanylate phosphodiesterase, at 1,874,694 to 1,875,521
_RS08220
HSERO_RS08225: HSERO_RS08225 - alpha/beta hydrolase, at 1,875,561 to 1,876,139
_RS08225
Position (kb) 1874
1875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1873.597 kb on + strand at 1873.623 kb on - strand, within HSERO_RS08210 at 1873.760 kb on - strand, within HSERO_RS08210 at 1873.829 kb on + strand, within HSERO_RS08210 at 1873.844 kb on + strand, within HSERO_RS08210 at 1873.847 kb on - strand, within HSERO_RS08210 at 1873.934 kb on - strand, within HSERO_RS08210 at 1874.109 kb on + strand, within HSERO_RS08210 at 1874.192 kb on + strand, within HSERO_RS08210 at 1874.200 kb on - strand, within HSERO_RS08210 at 1874.236 kb on + strand, within HSERO_RS08210 at 1874.357 kb on + strand at 1874.413 kb on + strand at 1874.457 kb on - strand, within HSERO_RS08215 at 1874.461 kb on + strand, within HSERO_RS08215 at 1874.504 kb on + strand, within HSERO_RS08215 at 1874.604 kb on - strand, within HSERO_RS08215 at 1874.714 kb on + strand at 1874.839 kb on + strand, within HSERO_RS08220 at 1875.038 kb on + strand, within HSERO_RS08220 at 1875.090 kb on - strand, within HSERO_RS08220 at 1875.189 kb on - strand, within HSERO_RS08220 at 1875.269 kb on + strand, within HSERO_RS08220 at 1875.297 kb on - strand, within HSERO_RS08220 at 1875.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,873,597 + -2.3 1,873,623 - HSERO_RS08210 0.12 -0.1 1,873,760 - HSERO_RS08210 0.29 +0.2 1,873,829 + HSERO_RS08210 0.37 +1.2 1,873,844 + HSERO_RS08210 0.39 -0.9 1,873,847 - HSERO_RS08210 0.39 +0.0 1,873,934 - HSERO_RS08210 0.50 -0.6 1,874,109 + HSERO_RS08210 0.71 +0.4 1,874,192 + HSERO_RS08210 0.81 +0.7 1,874,200 - HSERO_RS08210 0.82 +1.0 1,874,236 + HSERO_RS08210 0.86 +1.3 1,874,357 + -0.6 1,874,413 + +2.1 1,874,457 - HSERO_RS08215 0.19 +0.8 1,874,461 + HSERO_RS08215 0.20 -0.9 1,874,504 + HSERO_RS08215 0.40 +0.0 1,874,604 - HSERO_RS08215 0.87 -1.2 1,874,714 + +0.5 1,874,839 + HSERO_RS08220 0.18 -0.4 1,875,038 + HSERO_RS08220 0.42 +0.3 1,875,090 - HSERO_RS08220 0.48 +1.0 1,875,189 - HSERO_RS08220 0.60 +0.3 1,875,269 + HSERO_RS08220 0.69 -0.1 1,875,297 - HSERO_RS08220 0.73 +0.3 1,875,549 + -2.9
Or see this region's nucleotide sequence