Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06720

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,526,608	+		HSERO_RS06710	0.57	-1.3
1,526,610	+		HSERO_RS06710	0.57	+0.1
1,526,910	-		HSERO_RS06710	0.89	+0.2
1,527,250	-		HSERO_RS06715	0.35	+1.2
1,527,396	-		HSERO_RS06715	0.64	-0.6
1,527,547	+				+0.7
1,528,006	+				+1.8
1,528,393	-		HSERO_RS06720	0.63	-0.0
1,528,542	-		HSERO_RS06720	0.75	-0.7
1,528,777	-				-0.4
1,528,777	-				-0.1
1,528,821	+				+1.0
1,528,831	+				-0.9
1,528,849	-				-1.1
1,528,860	+				-0.5
1,528,945	+				-0.6
1,528,990	-				-0.7
1,529,096	+		HSERO_RS06725	0.13	+0.9
1,529,096	+		HSERO_RS06725	0.13	+0.2
1,529,104	-		HSERO_RS06725	0.14	-2.9
1,529,275	-		HSERO_RS06725	0.29	-1.9
1,529,522	-		HSERO_RS06725	0.51	+0.2
1,529,596	-		HSERO_RS06725	0.58	-1.8
1,529,609	+		HSERO_RS06725	0.59	-0.2
1,529,609	+		HSERO_RS06725	0.59	-1.5
1,529,628	+		HSERO_RS06725	0.61	-1.5
1,529,661	-		HSERO_RS06725	0.64	-3.3