Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05710

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,296,010	-		HSERO_RS05700	0.73	+1.1
1,296,042	-		HSERO_RS05700	0.76	-0.5
1,296,283	-				+0.2
1,296,296	+				+0.2
1,296,370	-				-0.2
1,296,370	-				-0.0
1,296,443	+		HSERO_RS05705	0.12	+0.2
1,296,457	+		HSERO_RS05705	0.15	-0.6
1,296,659	+				+1.1
1,296,710	-		HSERO_RS05705	0.76	-0.5
1,296,799	+				-0.9
1,296,835	-				+0.3
1,296,916	+				-0.5
1,296,952	-				+0.1
1,296,960	+				+0.4
1,296,981	+				+0.2
1,297,020	-		HSERO_RS05710	0.11	+0.3
1,297,020	-		HSERO_RS05710	0.11	+1.9
1,297,189	-		HSERO_RS05710	0.22	-2.8
1,297,189	-		HSERO_RS05710	0.22	-1.0
1,297,339	-		HSERO_RS05710	0.32	-2.6
1,297,451	-		HSERO_RS05710	0.40	+0.7
1,297,489	-		HSERO_RS05710	0.43	+0.6
1,297,537	+		HSERO_RS05710	0.46	-4.0
1,297,634	-		HSERO_RS05710	0.53	-0.1
1,297,861	+		HSERO_RS05710	0.68	+2.1
1,298,008	-		HSERO_RS05710	0.78	+0.7
1,298,048	+		HSERO_RS05710	0.81	+0.1
1,298,048	+		HSERO_RS05710	0.81	-0.9
1,298,147	+		HSERO_RS05710	0.88	+0.3
1,298,372	+				-0.9
1,298,380	-				+1.3
1,298,703	-		HSERO_RS05715	0.28	-3.1
1,298,775	+		HSERO_RS05715	0.34	+1.1
1,299,007	+		HSERO_RS05715	0.53	-0.9
1,299,124	+		HSERO_RS05715	0.63	-0.9
1,299,137	-		HSERO_RS05715	0.64	-0.4