Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05685

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,290,454	+		HSERO_RS05680	0.29	+1.4
1,290,512	+		HSERO_RS05680	0.35	+0.2
1,290,842	-		HSERO_RS05680	0.73	+0.3
1,290,878	-		HSERO_RS05680	0.77	+0.1
1,291,004	-				-1.3
1,291,029	+				+0.1
1,291,076	+				-0.0
1,291,084	-				-0.1
1,291,084	-				+0.3
1,291,520	-		HSERO_RS05685	0.22	+0.3
1,291,538	-		HSERO_RS05685	0.23	+1.3
1,291,543	-		HSERO_RS05685	0.24	-0.6
1,291,718	-				+0.4
1,291,719	-		HSERO_RS05685	0.33	+0.1
1,291,906	+		HSERO_RS05685	0.42	-0.7
1,292,094	-		HSERO_RS05685	0.52	-0.6
1,292,094	-		HSERO_RS05685	0.52	+0.8
1,292,317	+		HSERO_RS05685	0.64	+1.1
1,292,538	+		HSERO_RS05685	0.75	+0.1
1,292,573	-				-1.3
1,292,604	-		HSERO_RS05685	0.78	-0.1
1,292,664	+		HSERO_RS05685	0.81	-0.7
1,292,800	+		HSERO_RS05685	0.88	+0.6
1,293,045	-				+1.1
1,293,051	-				+2.1
1,293,106	-				+0.3
1,293,269	+				+1.8
1,293,269	+				+4.0
1,293,277	-				+1.0
1,293,279	-				+0.6
1,293,340	-		HSERO_RS05690	0.12	-0.4
1,293,489	+		HSERO_RS05690	0.32	-0.6
1,294,010	+				-1.1
1,294,014	-				+0.2