Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05680

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,289,214	-				+0.3
1,289,244	+				-0.2
1,289,378	-		HSERO_RS05675	0.14	-1.6
1,289,379	-		HSERO_RS05675	0.14	-1.3
1,289,390	+		HSERO_RS05675	0.15	+0.0
1,289,428	-		HSERO_RS05675	0.19	-0.4
1,289,598	-		HSERO_RS05675	0.37	-0.9
1,289,652	+		HSERO_RS05675	0.42	-2.4
1,289,785	+		HSERO_RS05675	0.56	-1.0
1,289,795	+		HSERO_RS05675	0.57	+0.5
1,289,803	-		HSERO_RS05675	0.58	+0.6
1,289,909	+		HSERO_RS05675	0.69	-1.0
1,289,909	+		HSERO_RS05675	0.69	-0.8
1,289,909	+		HSERO_RS05675	0.69	+0.4
1,289,957	-		HSERO_RS05675	0.74	+0.3
1,290,454	+		HSERO_RS05680	0.29	+1.4
1,290,512	+		HSERO_RS05680	0.35	+0.2
1,290,842	-		HSERO_RS05680	0.73	+0.3
1,290,878	-		HSERO_RS05680	0.77	+0.1
1,291,004	-				-1.3
1,291,029	+				+0.1
1,291,076	+				-0.0
1,291,084	-				-0.1
1,291,084	-				+0.3
1,291,520	-		HSERO_RS05685	0.22	+0.3
1,291,538	-		HSERO_RS05685	0.23	+1.3
1,291,543	-		HSERO_RS05685	0.24	-0.6
1,291,718	-				+0.4
1,291,719	-		HSERO_RS05685	0.33	+0.1
1,291,906	+		HSERO_RS05685	0.42	-0.7