Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05020

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,109,056	+		HSERO_RS05015	0.59	-1.3
1,109,183	+		HSERO_RS05015	0.66	-1.3
1,109,418	+		HSERO_RS05015	0.80	+0.3
1,109,418	-		HSERO_RS05015	0.80	-0.2
1,109,420	+		HSERO_RS05015	0.80	-1.4
1,109,472	+		HSERO_RS05015	0.83	+0.6
1,109,548	+		HSERO_RS05015	0.88	+0.2
1,109,549	-		HSERO_RS05015	0.88	-0.2
1,109,584	+				+0.9
1,109,587	-				-1.5
1,109,775	+				-0.3
1,109,805	+				-0.8
1,110,134	-		HSERO_RS05020	0.31	-0.4
1,110,341	+		HSERO_RS05020	0.53	+0.1
1,110,354	-		HSERO_RS05020	0.55	-0.3
1,110,487	+		HSERO_RS05020	0.69	+0.6
1,110,663	+		HSERO_RS05020	0.88	-3.0
1,110,911	-				-0.8
1,111,000	+				+0.1
1,111,070	-				-0.4
1,111,320	+		HSERO_RS05025	0.23	+0.2
1,111,348	+				+0.5
1,111,459	+		HSERO_RS05025	0.39	+2.6
1,111,554	+		HSERO_RS05025	0.50	+0.5
1,111,562	-		HSERO_RS05025	0.51	+2.1