Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04755

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04750 and HSERO_RS04755 are separated by 112 nucleotidesHSERO_RS04755 and HSERO_RS04760 are separated by 116 nucleotidesHSERO_RS04760 and HSERO_RS04765 are separated by 62 nucleotides HSERO_RS04750: HSERO_RS04750 - Fis family transcriptional regulator, at 1,040,618 to 1,041,760 _RS04750 HSERO_RS04755: HSERO_RS04755 - hypothetical protein, at 1,041,873 to 1,042,067 _RS04755 HSERO_RS04760: HSERO_RS04760 - FMN reductase, at 1,042,184 to 1,042,756 _RS04760 HSERO_RS04765: HSERO_RS04765 - alkanesulfonate monooxygenase, at 1,042,819 to 1,043,976 _RS04765 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1at 1041.250 kb on - strand, within HSERO_RS04750at 1041.287 kb on - strand, within HSERO_RS04750at 1041.345 kb on + strand, within HSERO_RS04750at 1043.065 kb on + strand, within HSERO_RS04765

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,041,250 - HSERO_RS04750 0.55 -0.6
1,041,287 - HSERO_RS04750 0.59 -0.0
1,041,345 + HSERO_RS04750 0.64 -2.3
1,043,065 + HSERO_RS04765 0.21 -0.4

Or see this region's nucleotide sequence